Gene detail

Gene detail information of Glyur002408s00032639

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G19760.1	1.00E-141	Mitochondrial substrate carrier family protein
NR	XP_003629745.1	0	Mitochondrial 2-oxoglutarate/malate carrier protein [Medicago truncatula]
Swissprot	tr\|Q9C5M0\|DTC_ARATH	0	Mitochondrial dicarboxylate/tricarboxylate transporter DTC
trEMBL	tr\|G7LIP6\|G7LIP6_MEDTR	0	Dicarboxylate carrier protein {ECO:0000313\|EMBL:AET04221.1}

Sequence

Transcript Sequence

>Glyur002408s00032639.1
GTTTGTTGGGCGAGGAATNGAGAGAGAAGAGGGAGGGTTTGTTTTGTGNATGCAATATTGTGTGTGTGTGAGCAAAGCAAAGCAACAAGGCTTATACTAATATATATGCTCGTAATTGGTTGTTNNCTTTCTCTTTGGCTAGCTCCATTCAGCTCCNAACACACACTCTCTCTCTCTCGTTCTCTTCGCTCTAACCCTTTTACCCAATCTCAGAAGCAGCAATGGGAGACGAGAAGAAGCCAAAGCCTGCTACCTCTGGTGTGTGGCCCACCGTCAAGCCCTTCGTCAATGGTGGAGCCTCCGGCATGCTCGCCACCTGTGTCATTCAACCCATCGACATGATCAAGGTGAGGATTCAATTGGGTCAAGGATCGGCTGTTAGTGTCACAACCAACATGCTTAAGAATGAGGGTGTTGCTGCCTTCTATAAGGGTCTATCTGCTGGGCTACTCAGGCAGGCTACATACACCACTGCTCGACTTGGATCATTTAGAATCCTGACAAGCAAAGCAATTGAGGCTAATGATGGCAAGCCCCTGCCGCTCTACCAAAAAGCTCTGTGTGGGCTGACTGCTGGTGCTATTGGAGCAACTGTTGGTAGTCCAGCAGATTTGGCACTCATTCGTATGCAAGCCGATGCAACTTTACCACTTGCTCAGCGCCGGAATTACACAAACGCCTTCCATGCACTTTATCGTATTGTTGCAGATGAAGGGGTTTTGGCACTTTGGAAAGGTGCTGGGCCTACTGTAGTAAGAGCCATGGCATTGAACATGGGGATGCTTGCATCTTATGATCAAAGTGTTGAGTTCTTCAAGGATTCCCTTGGTCTAGGTGAAGCTGCTACTGTCGTAAGTGCAAGTTCCGTTTCTGGATTCTTTGCAGCAGCTTGCAGTTTGCCATTTGACTATGTCAAGACCCAGATTCAGAAGATGCAACCTGATGCTGAGGGAAAATATCCATACACTGGCTCTCTTGACTGTGCTGTCAAAACCTTCAAAGCAGGAGGACCCTTCAAATTTTACACTGGATTCCCTGTCTATTGTGTTAGGATTGCTCCTCATGTCATGATGACATGGATCTTCCTCAACCAGATTCANAAATTGGAGAAATCCTATGGGTTGTAGTTCTCTGTGGCGAGGGGCATTTTCTGTTGAATTCAAGCTTTTTGAGCATTGAATAATTTGTTGGCTGTGTCGTCCCTTTTTGGCAATTAAACACCAATTGATCATTTTTTTAAGATTTAAATTAGTCATGCAAGACTGAAGCGGGAATTTAATATANCTTACATTGTATTAGTAATGCATAGAATTGGATGCGGCTGGAGCAAAGTAGTAGTATAAATTCCATTTTTTTGAATGGAGAAACTTCTAGAGATATCTTAAACTAGAATAAGTACTTTATCTCAGACAGCATTTAGACATCAAGTTTTGTAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02408	22838	26811	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002408s00032639.1	PF00153.22	Mito_carr	17	92	7.40E-15
Glyur002408s00032639.1	PF00153.22	Mito_carr	105	200	2.50E-20
Glyur002408s00032639.1	PF00153.22	Mito_carr	211	295	1.00E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	45.319
SRR1783600	control	45.370
SRR1783602	moderate drought stress	28.395
SRR1811619	moderate drought stress	28.160

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	60.132
DRR006520	Root Summer glycyrrhizin high producing strain	60.132
DRR006521	Root Winter glycyrrhizin high producing strain	75.566
DRR006522	Root Winter glycyrrhizin high producing strain	73.971
DRR006523	Root Summer glycyrrhizin low producing strain	36.843
DRR006524	Root Summer glycyrrhizin low producing strain	36.845
DRR006525	Leaf Summer glycyrrhizin high producing strain	85.048
DRR006526	Leaf Summer glycyrrhizin high producing strain	84.484

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	250.177
SRR2868004	Drought Stress (root)	171.492
SRR2967015	Control (root)	165.896

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	166.302
SRR9715740	Leaf	121.259
SRR9715741	Leaf	157.530
SRR9715739	Root	76.939
SRR9715742	Root	103.119
SRR9715743	Root	94.963

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	119.445
SRR8749028	MeJA induced 9h	40.864
SRR8749029	MeJA induced 9h	64.762
SRR8749030	Uninduced	37.816
SRR8749031	Uninduced	48.245
SRR8749032	Uninduced	58.233

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	154.107
SRR8400027	Control - Root	141.787