Gene detail

Gene detail information of Glyur002408s00032636

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G55320.1	acyl-activating enzyme 18
NR	XP_003524200.1	PREDICTED: probable acyl-activating enzyme 18, peroxisomal-like isoform X1 [Glycine max]
COG	YP_007141725.1	acetate--CoA ligase [Crinalium epipsammum PCC 9333]
Swissprot	tr\|Q84P17\|AEE18_ARATH	Probable acyl-activating enzyme 18, peroxisomal
trEMBL	tr\|I1K3Y1\|I1K3Y1_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G29030.1}

Sequence

Transcript Sequence

>Glyur002408s00032636.1
GTCGTTCATAGGTAGGCCTAATAATTTACACATTCAAAAAAGTCAACAGGCCGTGCAAGCGAGTGAAGAAAGAAACGGAGAGATTGTCAACAAAAAAAAAAAAGGAAACGGAGAGATTGAAAGAGAGAAAAAAGACAATGAATGATTTTGTTGTCATGTCACCTACTCCCGATCTATACTAGCTACACACAATGTTAGGTGGAGTCAATTTGGTGTGCTCAACCTCAACCCCANAACAAGTCCACAACTACTACTCTACCACTTGCATTAGCCACCCCCAATGTAAGAGAAAACGTTTCTTCTTCACCAGAACAGTATTAAGTTGAGCAAAGTTTGAAGTGGGAAGAAAGAGGAAGAGATAGAGATACAGAGGAGATGGTCATGGGAAAGAGCATAAGGGAGTTGGGAGTGGAGGAGTTTGTGAATGCTGGCTTGTCACTCGCAGATGCCAATCAATTCAATGCTGTTTTCAGGGACATTCTGTCCCTCTCCCTCTCCTCCGATAACCCAACTGACATCTGGCGCCGCCTCCTCACTCGCAGAGTCCTCAAACCATCACACCCTCATCCCTTGCATCAGCTTCTCTTCTACTCTCTCTATCATCACTCTTCTTCCTTGTTCCCCCATTCTGCAGCTCCTTCTCTTCCTCTTTATTGGTTCCCTTCTCTAGAGCAGTCGAGACGCACCAACCTAGGTCGTCTCATGGAAACTCACGGTTCTGAGCTTCTAGGAGCATCCTACAAAGACCCCATCACTAGTTATCCCCTCTTTCACAAGTTTTCTGTGTACTGGTCCCTCGTTCTCAAGGAACTTTCTGTTTCCTTTGTTGAACCTCCAAAGTGCATTTTGGATACCTCAGACCCATCCAAACATGGAGGAACTTGGCTCCCCGGTTCTGTCCTCAACATTGCAGAGTGCTGCTTGCAACCCTCTTCCCACCCATTCAAGCAAGACGACAGCATTGCCATCGTTTGGAGAGATGAGGGCTTTGATGATTCCGAGGTTAACCGCATCACACTCAAACAACTTCGACACCAAGTCATGTTGGTGGCAAATGCAATAGATGCCACATTCTCAAGGGGTGATGCAATCGCAATTGACATGCAAATGACAGTCAATGCTGTTGTTTTATACNTAGCCATTATTGTAGCAGGGTGCGTGGTGGTATCTATAGCTGATAGCTTTGCGCCAAAAGAAATTGCTACTCGCCTGCGCGTTTCCAAGGCAAAGGGTATTTTCACACAGGATTTCATATCAAGAGGTGGCAAGAAATTCCCTCTGTACAGTCGAGTCATTGAGGCAGCTGCTTGTAAAGTTATTGTGCTCCCTGTGAGAGGCAATGATGTAGGAGTGCAATTAAGGGAACAAGACTTGTCATGGAAAGGTTTTCTCTCTTCTGGCAGTCAGAACCACAGATCAGATCATTACTCTCCAATCTATCAATCAATTGATGCTGTCACTAATATACTATTTTCATCTGGAACCACAGGAGATCCAAAAGCTATTCCTTGGACTCAACTTGCCCCGATACGAAGTGCTGCTGATGGATGGGCTGCTCTTGATATTCAAGTTGGAGATGTCTACTGCTGGCCAACAAATTTAGGATGGGTGATGGGGCCCACTTTAATATACCATTGCTTTCTAAATGGTGCAACTCTTGCTTTGTACCATGGATCTCCTCAAGGCCATGGTTTTGGAAAATTTGTTCAGGATGCAGGTGTTACTATTTTGGGAACAGTTCCAAGCTTAGTNAAATCTTGGAAGAGTACACAATGTATGGAGGGCTTGGATTGGACAAAGATAAAATCATTTTGTTCCACTGGAGAAACATCAAATGTTGATGATGATCTATGGCTTTCTTCAAGAGCTTATTATAATCCAATCATTGAAGTATGTGGAGGCACGGAGCTTGCATCTAGCTACATTGCAGGAAGCCCTCTCCAGCCTCAAGCTTTTGGAGCATTCAGCACAGCATCAATGACAACTGGCTTTGTCATTCTTGACGAAAATGGNGTTCCTTATCCAGAAAATGTTCCTTGTGTTGGAGCATCTGATAGATTGCTGAATGCTGACCATGAAGAGGTTTACTTTAAGGGAATGCCCTTTTATAAAGGAAAGGTTCTTAGGAGACATGGAGATATAATCAAGAGAACGGCTGATGGGTATATCCTTGTACAAGGAAGGGCTGATGACACCATGAATCTTGGTGGAATAAAGACAAGTTCGATAGAAATTGAGCGTGTCTGCGACAGGGCTGATGAATGCATTATGGAGACAGCCGCAATCGGTGTTGCAACTGCTAATGGGGGACCAGAACAACTGGTTATATTTGCGGTTCTAAAGAAAGGATANGATTCAAATGCAGAATCTCTAAGGATGAAATTCTCTAAAGCCATTCAAAGCAACCTTAATCCTTTGTTTAAGGTAAGGCTTGTTAAAATTGTGCCNGAGTTTCCTCGAACATCTTCCAACAAAATCCTGAGGAGGGTAATGAGGGATCAAATGAAGCGTGAGCTATCAGTTCAGAGCAGACTATAGTGACCACTTAGTCTCAGGCAGACCAGGACAGCCACCAACGCTGAGTCCTCTTCATGTGGATATATATATATAAGTGAAGGAGAGGTGAACAAGAGAGTCAATCCTTTGAATTGAAAGCATGCAGATTTTTAACTACAGCATAGCATAGAATATATTTTTGCCTAGGTGAACGTGAAGTCCTAGGTGTGCAATCAAATCTGTGAAAATAAGTGACACCAGTGAGGGGTGTATTAATACAATAAGTATGTTTAAATGTCGCAAAAAATAAGCAAATCTGATTGTAGAATTACATTCCATGTTATAAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02408	9831	16943	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002408s00032636.1	PF00501.23	AMP-binding	191	610	1.10E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	26.037
SRR1783600	control	26.341
SRR1783602	moderate drought stress	28.183
SRR1811619	moderate drought stress	27.788

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.109
DRR006520	Root Summer glycyrrhizin high producing strain	7.212
DRR006521	Root Winter glycyrrhizin high producing strain	21.420
DRR006522	Root Winter glycyrrhizin high producing strain	20.416
DRR006523	Root Summer glycyrrhizin low producing strain	9.269
DRR006524	Root Summer glycyrrhizin low producing strain	8.915
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.717
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.707

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	47.020
SRR2868004	Drought Stress (root)	54.028
SRR2967015	Control (root)	64.157

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	53.041
SRR9715740	Leaf	42.142
SRR9715741	Leaf	78.166
SRR9715739	Root	21.804
SRR9715742	Root	31.182
SRR9715743	Root	29.660

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	36.044
SRR8749028	MeJA induced 9h	56.917
SRR8749029	MeJA induced 9h	27.283
SRR8749030	Uninduced	245.101
SRR8749031	Uninduced	333.539
SRR8749032	Uninduced	156.941

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	61.916
SRR8400027	Control - Root	51.133