Gene detail

Gene detail information of Glyur002405s00033428

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G13420.1	5.00E-73	high affinity K+ transporter 5
NR	KHN01441.1	0	Potassium transporter 5 [Glycine soja]
COG	NP_103011.1	2.00E-24	potassium uptake protein Kup [Mesorhizobium loti MAFF303099]
Swissprot	tr\|Q5JK32\|HAK5_ORYSJ	2.00E-102	Potassium transporter 5
trEMBL	tr\|I1NCT8\|I1NCT8_SOYBN	9.00E-152	Potassium transporter {ECO:0000256\|RuleBase:RU321113}

Sequence

Transcript Sequence

>Glyur002405s00033428.1
ATGTCTGGAGAAGCAGATCGGATGAGCGGAGAGGAAGAGATAGATACGGCAAACGAGACTGCGGAGAAAAACCAAAAGCTGAAGGAGCGAAAGGGATCATCGGCAAAGCTACGCCGTGTAGACTCTCTCAACTTGGAAGCTGGAAGAGTNTCTATGGCTGCAAACCACCCCTCCAAGGTGGATTTGCGCACGACACTGANCTTGGCATTTCAAAGCATAGGGATTGTATACGGTGATATTGGTACATCTCCACTCTATGTATATGCTAGTACTTTCACCAGTCCAGTCAAAAACAAAGATGACATTCTTGGCGTCTTGTCTATCATCATCTATACCATCCTGCTCATACCCTTGCTCAAATATGTTTTCATCGTATTATGGGCTAACGACAATGGAAACGATGCTGTTGTGGGTATCACTGTAGCGATCTTGGTCGTCCTATTTTGTGTGCAACGATTCGGTACTGATAAAGTGGGACTCTCATTTGCTCCAATTATTTGTACGTGGTTTTTATTCATCGCTGGAATTGGTCTCTACAATTTATTCAAATATGAAATTGGGGTATTACGGGCTTTTAATCCAAAATATATATTTGATTACTTTAAACGGAACGGTAAGCAAGGATGGATATCACTTGGTGGAGCCTTTCTATGCATAACAGGATCTGAGGCTATGTTTGCTGACTTGGGTCATTTTAACGTTCGAGCCATTCAACATGTATTCTGGTCTGTGCTGCCTTCAAGACCACAGAAAAGATTAGCCATGCATATGCAAAGCAAGCATGACAAGTGGGCAAGGATTGCAGTTGTTGGTGATATGCTGATCACAACAACACTAGTTTCGCTTATAATGCTAGTTATATGGAAGAAGAGCCTATGGCAGGTGGCTATCTTCTCTTTGGCATTCGGTTTTACTGAGCTTATTTACTTGTCATCTCAATTGACCAAGTTCACGGGAGGAGGTTATCTTCCAATTGTGTTAGCTCTATTCTTGACGACAATGATGGGAATCTGGCATTATGTGCACAAAGAGAGGTACATATTTGAGCTCAAAAACAAGGTTTCTATTGAGTATTTGAGAGAGTTGGCCGACAATAGAGACGTACATAGAGTGCCTGGAATCGGACTTCTGTATTCTGAGCTTGTACATGGCATTCCTCCTATATTCCGACACTTCATAGTCAGCGTGCCATCGATCCATTCAGTTGTCGTCTTTGTTTCCATCAAGACAATCCCCGTGAGTAGAGTTGCATCAGAAGAGAGATTTCTGTTTCGGCAGGTGGAACCAAGGGAGTATCGAGTGTTTCGTTGTGTTGTGAGGCGTGGTTACAGTGATGTGGTTGAGAATCCTGTGGAGTTTGAGTCACAGTTAATACAAAATCTCAAGGGATTTATTNAACAAGAGAGCTTTATGCTCGAGTCGACTGCAGCTGAACCTAGTAAAACTATCAATTCCACCAATGTTGAGAGTGGTGATGATCAGAATCAGATGGCAGCCGGTGCGACCAAGTCATTCGCTGCCCCATTCATCCAAGGAGTTGAGGAGGAAATAAAATTTATAGAGAAAGCAGAGGATATGGGTGTGGTATACATGCTAGGGGAAGCAGATGTAATGGCTCACCCAAATTCCACCATCTTGACTAAGATAGTTGTCAACTATGCTTATAGCTTCTTGCGAAACAACTTTAGACAGGGGGAAAACTTGATGGCAATCCCACGCAATAGATCACTTCTCAAGGTTGGAATGACATATGAAATATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02405	610	5681	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0071805 potassium ion transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0015079 potassium ion transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002405s00033428.1	PF02705.11	K_trans	69	133	3.70E-21
Glyur002405s00033428.1	PF02705.11	K_trans	134	246	1.70E-41
Glyur002405s00033428.1	PF02705.11	K_trans	267	444	2.80E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.226
SRR1783600	control	0.219
SRR1783602	moderate drought stress	0.167
SRR1811619	moderate drought stress	0.205

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.123
DRR006520	Root Summer glycyrrhizin high producing strain	0.122
DRR006521	Root Winter glycyrrhizin high producing strain	0.063
DRR006522	Root Winter glycyrrhizin high producing strain	0.061
DRR006523	Root Summer glycyrrhizin low producing strain	0.062
DRR006524	Root Summer glycyrrhizin low producing strain	0.031
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.052
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.052

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.644
SRR2868004	Drought Stress (root)	0.818
SRR2967015	Control (root)	0.381

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.162
SRR9715740	Leaf	0.120
SRR9715741	Leaf	0.510
SRR9715739	Root	0.069
SRR9715742	Root	0.088
SRR9715743	Root	0.003

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.762
SRR8749028	MeJA induced 9h	19.095
SRR8749029	MeJA induced 9h	6.778
SRR8749030	Uninduced	42.809
SRR8749031	Uninduced	27.976
SRR8749032	Uninduced	30.214

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.191
SRR8400027	Control - Root	0.203