Gene detail

Gene detail information of Glyur002404s00042218

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14470.1	2.00E-52	NB-ARC domain-containing disease resistance protein
NR	XP_003599596.1	0	NBS-LRR type disease resistance protein [Medicago truncatula]
COG	YP_007097940.1	2.00E-12	putative ATPase [Chamaesiphon minutus PCC 6605]
Swissprot	tr\|Q9LRR4\|R13L1_ARATH	1.00E-81	Putative disease resistance RPP13-like protein 1
trEMBL	tr\|G7J119\|G7J119_MEDTR	0	NB-ARC domain disease resistance protein, putative {ECO:0000313\|EMBL:AES69847.1}

Sequence

Transcript Sequence

>Glyur002404s00042218.1
ATGGCTGCATCTTTGGTTGGAGGGGCTTTTCTTTCTGCTACCGTTCAAACCTTAGTAGAGAAACTAGCCTCAACAGAGTTTCGTGATTACATCAGAAACAACAAGTTAAATGAGTCGCTATTGGCAGAGATGGAAACAACACTGCTTGCTCTTCAGGCAGTTCTGGATGATGCAGAGCAGAAGCAAATCGTCAACGATGCGGTCAAGAAATGGCTGGATCAGTTGAAAGATGCAATCTTTGATGCAGAGGATTTGTTCAATCAAATCAGTTATGATTCCCTGCGATGCAAGGTGGAGAAAACACATGCTGAAAACATTACTAATCAGGTTTGGAACTTCNTTTCTTCTCCTTTTAAAAACTCCTATGGAGAGATCAATTCCCAGATGAAGATTATGTGTCAAAAGCTACAACTTTTTGCCCAGCAGAGAGACATCATTGGCTTGCAAACTGTAAGTGGGAGAATTTCTCGTAGAACACCAACAAGTCCAACGGTAAATGAGTCTGTTATGGTTGGTAGGAAGGATGATAAAGAAAAACTAATGAATATGTTGCTGTCAGATAGTGGATTTGGTAGTAACAATATCGGTGTTGTTGCAATCTTNGGCATGGGAGGTGTTGGTAAAACAACGCTTGCTCAACTTCTTTACAACGATGAAGAAGTTCAAAAACATTTTGATCTAAAAGCATGGGTTTGTGTTTCGGAGGATTTTGATATTTTGAGAGTGACNAAAAGTCTCCTTGAATCTATCCCTTCGNGAGCTAATGAAAATAATAATCTTGATATTCGAGCTGAATTAAAGCAAAACTTGAGGGATAAAAGATTTTTATTTGTGTTGGATGATCTATGGAATGACAACTATAACGATTGGGAGGAGCTGGTAACTCCCTTGATTAGTGGAAAATCTGAAAGCAGGGTGATCATCACAACACGCCAACAAAGAGTCGCAGAGTTCGCACACCCATTCTCTGTTCATAAGTTAGAACCTCTGTCAGATGAAGACTGCTGGTCTTTACTCTCAAAGCATGCATTTGGTAGTGATGAGCTCTATTGCAAGAAAAACCCAAACCTAGAAGCAATTGGCAGTAGGCAAAGCATCTTTTCAAATGAGAGGGAAGATATTGATAACTTAAAAGCAAAGCCGGCAGAATATTATCATTTCGTAAGTTCCATATATCGTTATTTAAGATTGCAGTCCACTCCTTTGCATCTACCTTTGAACGCATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02404	40498	41724	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002404s00042218.1	PF00931.17	NB-ARC	173	362	5.30E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.818
SRR1783600	control	1.974
SRR1783602	moderate drought stress	4.854
SRR1811619	moderate drought stress	4.731

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.129
DRR006520	Root Summer glycyrrhizin high producing strain	4.117
DRR006521	Root Winter glycyrrhizin high producing strain	4.359
DRR006522	Root Winter glycyrrhizin high producing strain	4.646
DRR006523	Root Summer glycyrrhizin low producing strain	2.132
DRR006524	Root Summer glycyrrhizin low producing strain	2.330
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.972
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.097

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.041
SRR2868004	Drought Stress (root)	6.074
SRR2967015	Control (root)	5.904

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.430
SRR9715740	Leaf	0.806
SRR9715741	Leaf	2.094
SRR9715739	Root	0.241
SRR9715742	Root	2.931
SRR9715743	Root	2.092

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.002
SRR8749028	MeJA induced 9h	2.422
SRR8749029	MeJA induced 9h	0.420
SRR8749030	Uninduced	1.092
SRR8749031	Uninduced	1.246
SRR8749032	Uninduced	0.040

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.804
SRR8400027	Control - Root	9.291