Gene detail information of Glyur002404s00042213 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G14470.1 | 7.00E-167 | NB-ARC domain-containing disease resistance protein |
| NR | XP_003599594.1 | 0 | NBS-LRR type disease resistance protein [Medicago truncatula] |
| COG | YP_007097940.1 | 9.00E-14 | putative ATPase [Chamaesiphon minutus PCC 6605] |
| Swissprot | tr|Q9LRR4|R13L1_ARATH | 0 | Putative disease resistance RPP13-like protein 1 |
| trEMBL | tr|G7J117|G7J117_MEDTR | 0 | LRR and NB-ARC domain disease resistance protein {ECO:0000313|EMBL:AES69845.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02404 | 3 | 4849 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002404s00042213.1 | PF00931.17 | NB-ARC | 134 | 418 | 1.80E-81 |
| Glyur002404s00042213.1 | PF13855.1 | LRR_8 | 537 | 593 | 4.50E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.383 |
| SRR1783600 | control | 4.372 |
| SRR1783602 | moderate drought stress | 8.995 |
| SRR1811619 | moderate drought stress | 9.061 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.195 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.015 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.514 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.824 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.308 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.472 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.895 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.697 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.305 |
| SRR2868004 | Drought Stress (root) | 10.033 |
| SRR2967015 | Control (root) | 9.298 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.887 |
| SRR9715740 | Leaf | 3.893 |
| SRR9715741 | Leaf | 4.005 |
| SRR9715739 | Root | 2.022 |
| SRR9715742 | Root | 4.761 |
| SRR9715743 | Root | 4.418 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.132 |
| SRR8749028 | MeJA induced 9h | 3.614 |
| SRR8749029 | MeJA induced 9h | 1.520 |
| SRR8749030 | Uninduced | 2.932 |
| SRR8749031 | Uninduced | 1.438 |
| SRR8749032 | Uninduced | 1.265 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.908 |
| SRR8400027 | Control - Root | 11.290 |