Gene detail

Gene detail information of Glyur002403s00038668.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G17180.1	3.00E-16	C2H2-like zinc finger protein
NR	XP_007134731.1	0	hypothetical protein PHAVU_010G071100g [Phaseolus vulgaris]
Swissprot	tr\|Q9SIJ0\|ZAT2_ARATH	6.00E-22	Zinc finger protein ZAT2
trEMBL	tr\|V7AN80\|V7AN80_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW06725.1}

Sequence

Transcript Sequence

>Glyur002403s00038668.1
ATGAGGGCGCATGGCATAGGGGATGAAACGGGTCAGATGGATGATGACGATCCCGCAAGCGATTGGGAAGATAGATTGGGGGGCAATAACGTGCCACCCAGCAACAAACGCATGTATGCTCTAAGAACAAACCCAAATAGGCTAAAGAGTTGTAGGGTGTGTGAGAATTGTGGCAAGGAGTTCTTGTCCTGGAAATCTTTCCTTGAACATGGAAAGTGCGCCTCCGAGGATGCAGAGTCCCTCGTCTCCTCTCCTGGCTCTGATGCCGCCGCAGACGATGGCATCAGTGATCGGAGAGGAGGAGGTTGTGGTAGCAACAATGGCACTGGCTGGTCCAAAAGGAAGAGATCCCTGAGGACCAAAGTGGGTAGCTTCAATTACAACATTAATTGCCCTTCAAGCGAGGAGGAAGACCTTGCTAATTGCCTCATGATGTTGTCCAACGCCATCGTGGATCATCATCCCCTCGTCGTGGAACCCGAGGAGTCATGTGCCTCGGCTAGTAGAGATGAGGAGAGAATAAGAAACCCCATGAACTTCATCGCGCCATTGTCGTCATGCAGAGTCCCCCTCGATAACAACAAGGCCAAAGCTGTTGTTCCCACCACCGCTAANACCAACACCAATAGCAAGGGCTTGTTCGAATGCAAGGCATGTAAGAAAGTGTTCAACTCGCACCAAGCGCTGGGTGGACACAGAGCGAGTCACAAAAAGGTAAAAGGTTGTTTCGCCGCAAGGCTAGACAACAACAACAACAACCTCGGCGAGGATAATAGTCTCGCCGAGGATGATGTCATCACCCAGGAGGAGTTTTTCCCCTCAACAACAACGAAATCGAACTCCACCACCACCCTTCACCACCAGTTCGACCACGGCTACTCCTCCAACCCAATATTGGCCTCTTCCTCCTCCAATAAGAGAAAATCCAAGGTTCATGAGTGCTCCATTTGCCATAGGAGCTTCTCTTCTGGACAAGCACTTGGGGGACACAAGAGNTGCCATTGGATCACGTCGAACGCATCCCCCGGCGCCGACACATCCACGTTGGCAAGGTTTCAACAGTTTCATCAAGAACACATGGAGAATCATCATCAGAATATGATACCAAAATTTGATGCCTCTTCTTCTGANCAGCCACTAAATATTGATCTCAAGCTTGACCTCAATCTCCCTGCTCCCACCACCACAAATGACCTCGCACGAAGGAATAATAACAGCAATGTGTCCACCGAAATCTACTTGCAGGCTCCATGGGGTACTAGTAATGCAACAACCAAGGACATTAACAACANCATCATCAAAGATGATGAGAACAACAACAATAACAATAGTCAATGTCAGAGTCAGCACAACCACAATAACTTGCAAGTTGTTCATGAAAATGACACTAATATTATTGAAGAGGACAGAAACGTGGATAATGAAGGTGATAGTAAGGTCAAGTTGGCGAAACTGAGTGAGCTAAAGGACATGAACATTGGTGGAACTTCTTCGCCATGGTTGCAGGTGGGAATTGGTCCAACCACTGATGTGGGGACTGATACGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02403	18597	20144	+

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2
EAR motif-containing Proteins	C2H2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002403s00038668.1	PF13912.1	zf-C2H2_6	53	70	11
Glyur002403s00038668.1	PF13912.1	zf-C2H2_6	213	238	1.10E-08
Glyur002403s00038668.1	PF13912.1	zf-C2H2_6	311	335	4.60E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.094
SRR1783600	control	0.094
SRR1783602	moderate drought stress	0.145
SRR1811619	moderate drought stress	0.171

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.232
DRR006520	Root Summer glycyrrhizin high producing strain	0.344
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.071
DRR006524	Root Summer glycyrrhizin low producing strain	0.068
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.120
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.180

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.282
SRR2868004	Drought Stress (root)	0.196
SRR2967015	Control (root)	0.066

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.129
SRR9715740	Leaf	0.068
SRR9715741	Leaf	0.127
SRR9715739	Root	0.096
SRR9715742	Root	0.030
SRR9715743	Root	0.119

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.491
SRR8400027	Control - Root	0.158