Gene detail information of Glyur002401s00033806 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G55290.2 | 2.00E-89 | NAD(P)-binding Rossmann-fold superfamily protein |
| NR | XP_007145484.1 | 1.13E-166 | hypothetical protein PHAVU_007G242900g [Phaseolus vulgaris] |
| COG | YP_076132.1 | 7.00E-44 | gluconate dehydrogenase [Symbiobacterium thermophilum IAM 14863] |
| Swissprot | tr|P28643|FABG_CUPLA | 3.00E-36 | 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic (Precursor) |
| trEMBL | tr|V7BKB7|V7BKB7_PHAVU | 4.00E-167 | Uncharacterized protein {ECO:0000313|EMBL:ESW17478.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02401 | 18284 | 21111 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002401s00033806.1 | PF00106.20 | adh_short | 20 | 195 | 7.50E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.160 |
| SRR1783600 | control | 0.174 |
| SRR1783602 | moderate drought stress | 0.089 |
| SRR1811619 | moderate drought stress | 0.077 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.519 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.761 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.435 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.331 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.497 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.560 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.745 |
| SRR2868004 | Drought Stress (root) | 27.107 |
| SRR2967015 | Control (root) | 5.354 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 21.053 |
| SRR9715740 | Leaf | 3.609 |
| SRR9715741 | Leaf | 10.942 |
| SRR9715739 | Root | 0.285 |
| SRR9715742 | Root | 1.249 |
| SRR9715743 | Root | 1.392 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.828 |
| SRR8749028 | MeJA induced 9h | 2.859 |
| SRR8749029 | MeJA induced 9h | 3.729 |
| SRR8749030 | Uninduced | 3.597 |
| SRR8749031 | Uninduced | 0.700 |
| SRR8749032 | Uninduced | 4.770 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.028 |
| SRR8400027 | Control - Root | 1.145 |