Gene detail information of Glyur002401s00033804 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G28110.2 | 3.00E-163 | serine carboxypeptidase-like 45 |
| NR | XP_006589008.1 | 0 | PREDICTED: serine carboxypeptidase-like 45-like [Glycine max] |
| COG | YP_002430787.1 | 5.00E-29 | peptidase S10 serine carboxypeptidase [Desulfatibacillum alkenivorans AK-01] |
| Swissprot | tr|Q93Y09|SCP45_ARATH | 0 | Serine carboxypeptidase-like 45 (Precursor) |
| trEMBL | tr|I1LA88|I1LA88_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G19260.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02401 | 2494 | 7125 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002401s00033804.1 | PF00450.17 | Peptidase_S10 | 44 | 444 | 1.10E-112 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.301 |
| SRR1783600 | control | 11.362 |
| SRR1783602 | moderate drought stress | 4.308 |
| SRR1811619 | moderate drought stress | 4.454 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 34.383 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 33.628 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.565 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.490 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 25.915 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 25.312 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 76.016 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 75.332 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 56.717 |
| SRR2868004 | Drought Stress (root) | 83.285 |
| SRR2967015 | Control (root) | 52.757 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 223.826 |
| SRR9715740 | Leaf | 141.921 |
| SRR9715741 | Leaf | 188.986 |
| SRR9715739 | Root | 1.295 |
| SRR9715742 | Root | 41.756 |
| SRR9715743 | Root | 36.321 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.000 |
| SRR8749028 | MeJA induced 9h | 3.586 |
| SRR8749029 | MeJA induced 9h | 6.304 |
| SRR8749030 | Uninduced | 5.191 |
| SRR8749031 | Uninduced | 6.443 |
| SRR8749032 | Uninduced | 7.843 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 29.420 |
| SRR8400027 | Control - Root | 23.206 |