Gene detail

Gene detail information of Glyur002399s00033218

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G10250.1	Phototropic-responsive NPH3 family protein
NR	KEH20836.1	phototropic-responsive NPH3 family protein [Medicago truncatula]
Swissprot	tr\|Q9LFU0\|DOT3_ARATH	BTB/POZ domain-containing protein DOT3
trEMBL	tr\|A0A072TUJ7\|A0A072TUJ7_MEDTR	Phototropic-responsive NPH3 family protein {ECO:0000313\|EMBL:KEH20836.1}

Sequence

Transcript Sequence

>Glyur002399s00033218.1
AGAACATTTTCTCAGCATTAATTTAGACAACATCTCTGGTCCCTTATATCATTTAGATTTTAGACTAGCCATCAAAATGGTGTGTCTATCCCAAGCATACTGCAGTTANCTAAAGAATCACCATGAAGTCTCTTCAAGTGGCCCAAGCACCAGACCCTGAAAGTCAGACTGGCAGAATTGATCAAGTTTCAGATAAAAGCATTGTAATTCCCAACAAACTCGTCACAATAGCTGATAGCATCAAAGGCGAACAAGCATGGTTCATTTCTCCTCAAATCCCAACAGACTTTTCAATTGAAGTCCAGGAAACCACTTATAATGTACACAAGTACCCCTTGATATCAAAATGCGGCTACATAGGACGTTTGGAAGTTCAGCCTTTGATCTCAAATTCTGGCAATGTGCTCAAGCTTGAAAACTTTCCAGGTGGATCTGAAACATTTGAAACAATTCTAAAGTTCTGTTATGGCCTCCCTATAGACTTCGACTCAAATAATATAGCTGCATTAAGATGTGCATCAGAATTCCTAGAGATGACTGAAGAACTAGAAGATGGAAATCTCATTTCCAAGACCGAAGCTTTCCTCACATTCGTCGTGCTTTCTTCATGGAAAGACACTCTCACTGTTCTGAGATCTTGTGAAAATCTCTCTCCATGGGTTGAGAACCTCCAAATTGTTAGAAGATGCTGTGATTCTATAGCCTGGAAGGCTTCTAAAAATGAGCACACAAGTGAGGATGCAGCAGCTAATCAAGAAAGCTGGTGGTTCAATGATGTGGCCACCTTCCGCATCGATCATTTTATGCGGATCATTTCAGCAATAAGGGCAAAAGGAACCAAGCCTGAGATCATTGGTAAATGTATCATGCAATATGCCAAGAGATGGCTACCAGGGATGGATGTGGAGTTGGAAGGGCTAAGAGGATATGGGCATGGAAAAAGTAATCTTCAGTTCAGTATTTTTAGTGGGAAGAAAAAAGAAAGCACTGGGCACAGCAAGGAGCAAAAGGCTATTATTGAAAGCCTAGTAAGCATAATTCCTCCGCAACAAGAAGCTGTCCCATGTAAGTTCTTGTTGCAGATATTAAAGATGGCCATGATGTATTCTGTATCTCCAGCTCTCATTTCAGACCTTGAAAAGAGAGTGGGCATGGTTAGCATGACCAATTCAACCGAAGACTGCACTATGCAAGACATAAATGTAGTGCAACGAATTGTTGAACACTTCTTGATGCATGAACAACAGCAACTGCAACTGCAACAAAAGTCCGGGAAATTCAATATTAGTAGGCTCTTGGACAATTACCTAGCTGAAATTGCAAGAGACCCAAATCTTTCAATTACAAAGTTCCAAGTTTTAGCTGAATTGCTACCAGAAAATACTCGATCATGTGATGACGGTTTATATAGAGCCATTGACACCTACCTCAAGACCCATCCTTCACTGAGCGACCATGACCGTAGAAGACTCTGCAAAATAATGAACTGTGAAAAACTCTCATTTGATGCATGCTTGCATGCTGCACAAAATGATAGACTGCCTCTAAGAACTGTTGTCCAGGTTCTATTTTCAGAGCAAGTAAAGATGAGGGCAGCAATGCAAGAGAAGGAACCAGCACAAAGTGGAATCAACTCTGAACAGGATGGAAACCAGGCATCTGCATCTATGGACATTAAAACACTCAAAGCAGAACTTGAGAATGTAAAGTCCAACATGGTAGAACTGCAGAGCGACTACTTTGAGCTGCAACGAGAGTATGNAAAGTTAAGCAACAAGCCAAAGAATGGCTGGGGTTTAAATTGGAGGAAGATTAAGAACTCCCTTCATGTGAAACCTGCAGGAGATGAAACTAGAGATGGACAGGATATGCCCAAGTCACCAAACCCCACTCAACGTAAAGGAGCCCTGAGAAGAAGGCTTTCCATGTCTTAAAAGTATTTCAACATAAAAAATCCTGTAGCAGAAGCACCTATATACCCATTTTTTACATGAAATATAGTCTAAATTTTATATCTAAAGATGTTGTTGACTTCAAAGAAAGAAAGGTTTTTTGTTCGCTGAAGGTTACATATACAAAAGAGGCTTCCAACTGCTGCAATACATGTAACACATACCTAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02399	30765	34884	-

Gene family

Gene family	subfamily
Ubiquitin Family	BTB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016567 protein ubiquitination

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002399s00033218.1	PF03000.9	NPH3	213	464	1.30E-81

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.340
SRR1783600	control	0.324
SRR1783602	moderate drought stress	0.363
SRR1811619	moderate drought stress	0.443

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.314
DRR006520	Root Summer glycyrrhizin high producing strain	0.329
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.475
DRR006524	Root Summer glycyrrhizin low producing strain	0.427
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.412
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.439

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.554
SRR2868004	Drought Stress (root)	0.863
SRR2967015	Control (root)	0.538

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.801
SRR9715740	Leaf	6.245
SRR9715741	Leaf	5.885
SRR9715739	Root	0.000
SRR9715742	Root	0.076
SRR9715743	Root	0.116

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.438
SRR8749028	MeJA induced 9h	5.960
SRR8749029	MeJA induced 9h	4.012
SRR8749030	Uninduced	5.954
SRR8749031	Uninduced	1.979
SRR8749032	Uninduced	3.899

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.761
SRR8400027	Control - Root	0.540