Gene detail information of Glyur002399s00033215 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G39870.2 | 3.00E-91 | TLD-domain containing nucleolar protein |
| NR | XP_003531351.1 | 0 | PREDICTED: uncharacterized protein LOC100814579 isoform X1 [Glycine max] |
| trEMBL | tr|K7L6H5|K7L6H5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G14441.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02399 | 18564 | 22661 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002399s00033215.1 | PF07534.11 | TLD | 213 | 349 | 3.70E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.332 |
| SRR1783600 | control | 16.317 |
| SRR1783602 | moderate drought stress | 22.493 |
| SRR1811619 | moderate drought stress | 22.734 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.046 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.479 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 44.612 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 43.244 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.743 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.581 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.353 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.093 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.320 |
| SRR2868004 | Drought Stress (root) | 23.718 |
| SRR2967015 | Control (root) | 26.279 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.594 |
| SRR9715740 | Leaf | 11.892 |
| SRR9715741 | Leaf | 11.857 |
| SRR9715739 | Root | 6.753 |
| SRR9715742 | Root | 10.479 |
| SRR9715743 | Root | 8.817 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.518 |
| SRR8749028 | MeJA induced 9h | 14.542 |
| SRR8749029 | MeJA induced 9h | 13.033 |
| SRR8749030 | Uninduced | 15.156 |
| SRR8749031 | Uninduced | 18.746 |
| SRR8749032 | Uninduced | 22.803 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 27.075 |
| SRR8400027 | Control - Root | 23.877 |