Gene detail information of Glyur002398s00034258 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G56070.1 | 0 | Ribosomal protein S5/Elongation factor G/III/V family protein |
| NR | XP_003596187.1 | 0 | Elongation factor EF-2 [Medicago truncatula] |
| COG | NP_147939.1 | 2.00E-98 | elongation factor EF-2 [Aeropyrum pernix K1] |
| Swissprot | tr|O23755|EF2_BETVU | 0 | Elongation factor 2 |
| trEMBL | tr|G7IH34|G7IH34_MEDTR | 0 | Translation elongation factor EF-2 subunit {ECO:0000313|EMBL:AES66438.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02398 | 22793 | 25457 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002398s00034258.1 | PF00009.22 | GTP_EFTU | 1 | 93 | 2.00E-27 |
| Glyur002398s00034258.1 | PF03144.20 | GTP_EFTU_D2 | 355 | 431 | 4.60E-14 |
| Glyur002398s00034258.1 | PF03764.13 | EFG_IV | 552 | 602 | 1.30E-10 |
| Glyur002398s00034258.1 | PF00679.19 | EFG_C | 641 | 701 | 4.10E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.652 |
| SRR1783600 | control | 2.933 |
| SRR1783602 | moderate drought stress | 4.207 |
| SRR1811619 | moderate drought stress | 3.811 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.769 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.262 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.735 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.695 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.781 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.792 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.891 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.765 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.950 |
| SRR2868004 | Drought Stress (root) | 10.479 |
| SRR2967015 | Control (root) | 9.549 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.593 |
| SRR9715740 | Leaf | 0.207 |
| SRR9715741 | Leaf | 0.562 |
| SRR9715739 | Root | 5.377 |
| SRR9715742 | Root | 8.542 |
| SRR9715743 | Root | 6.559 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.661 |
| SRR8749028 | MeJA induced 9h | 7.188 |
| SRR8749029 | MeJA induced 9h | 2.011 |
| SRR8749030 | Uninduced | 3.837 |
| SRR8749031 | Uninduced | 2.550 |
| SRR8749032 | Uninduced | 4.130 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.761 |
| SRR8400027 | Control - Root | 3.148 |