Gene detail information of Glyur002398s00034257 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G16570.1 | 0 | UDP-Glycosyltransferase superfamily protein |
| NR | XP_004488821.1 | 0 | PREDICTED: chitobiosyldiphosphodolichol beta-mannosyltransferase-like isoform X2 [Cicer arietinum] |
| trEMBL | tr|G7IH35|G7IH35_MEDTR | 0 | Group 1 family glycosyltransferase {ECO:0000313|EMBL:AES66439.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02398 | 15871 | 25347 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT33 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K03842 | ALG1 | EC:2.4.1.142 | N-Glycan biosynthesis | map00510 |
| Various types of N-glycan biosynthesis | map00513 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002398s00034257.1 | PF13579.1 | Glyco_trans_4_4 | 38 | 199 | 7.20E-08 |
| Glyur002398s00034257.1 | PF13692.1 | Glyco_trans_1_4 | 272 | 439 | 1.10E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.423 |
| SRR1783600 | control | 3.483 |
| SRR1783602 | moderate drought stress | 5.026 |
| SRR1811619 | moderate drought stress | 4.996 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.995 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.703 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.287 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.284 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.452 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.243 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.172 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.125 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.599 |
| SRR2868004 | Drought Stress (root) | 24.963 |
| SRR2967015 | Control (root) | 20.262 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.093 |
| SRR9715740 | Leaf | 3.533 |
| SRR9715741 | Leaf | 4.919 |
| SRR9715739 | Root | 11.517 |
| SRR9715742 | Root | 15.510 |
| SRR9715743 | Root | 14.127 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.170 |
| SRR8749028 | MeJA induced 9h | 13.586 |
| SRR8749029 | MeJA induced 9h | 4.568 |
| SRR8749030 | Uninduced | 8.733 |
| SRR8749031 | Uninduced | 5.604 |
| SRR8749032 | Uninduced | 4.981 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.209 |
| SRR8400027 | Control - Root | 11.631 |