Gene detail information of Glyur002398s00034256 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G16590.1 | 1.00E-79 | DNA-binding HORMA family protein |
| NR | XP_003596189.1 | 6.00E-134 | Mitotic spindle assembly checkpoint protein MAD2B [Medicago truncatula] |
| Swissprot | tr|Q94FL5|REV7_ARATH | 7.00E-100 | DNA polymerase zeta processivity subunit |
| trEMBL | tr|G7IH36|G7IH36_MEDTR | 2.00E-134 | Mitotic spindle assembly checkpoint MAD2B-like protein {ECO:0000313|EMBL:AES66440.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02398 | 12378 | 15702 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002398s00034256.1 | PF02301.13 | HORMA | 12 | 183 | 1.60E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.018 |
| SRR1783600 | control | 7.946 |
| SRR1783602 | moderate drought stress | 9.575 |
| SRR1811619 | moderate drought stress | 9.923 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.992 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.985 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.555 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.198 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 27.654 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 28.205 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.708 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.696 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.390 |
| SRR2868004 | Drought Stress (root) | 21.542 |
| SRR2967015 | Control (root) | 16.532 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.087 |
| SRR9715740 | Leaf | 9.089 |
| SRR9715741 | Leaf | 6.657 |
| SRR9715739 | Root | 3.057 |
| SRR9715742 | Root | 3.658 |
| SRR9715743 | Root | 6.243 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.572 |
| SRR8749028 | MeJA induced 9h | 7.128 |
| SRR8749029 | MeJA induced 9h | 4.197 |
| SRR8749030 | Uninduced | 3.248 |
| SRR8749031 | Uninduced | 0.174 |
| SRR8749032 | Uninduced | 0.690 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.454 |
| SRR8400027 | Control - Root | 14.346 |