Gene detail information of Glyur002395s00034805 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G01970.1 | 8.00E-130 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004492640.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g01970-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9LPC4|PPR1_ARATH | 1.00E-171 | Pentatricopeptide repeat-containing protein At1g01970 |
| trEMBL | tr|I3T422|I3T422_LOTJA | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK47264.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02395 | 9348 | 12717 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002395s00034805.1 | PF01535.15 | PPR | 169 | 197 | 0.49 |
| Glyur002395s00034805.1 | PF01535.15 | PPR | 204 | 231 | 0.00022 |
| Glyur002395s00034805.1 | PF01535.15 | PPR | 238 | 263 | 1.30E-05 |
| Glyur002395s00034805.1 | PF13812.1 | PPR_3 | 272 | 304 | 0.0079 |
| Glyur002395s00034805.1 | PF01535.15 | PPR | 311 | 337 | 0.013 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.006 |
| SRR1783600 | control | 3.075 |
| SRR1783602 | moderate drought stress | 2.131 |
| SRR1811619 | moderate drought stress | 2.084 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.906 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.945 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.417 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.381 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.954 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.067 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.007 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.022 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.144 |
| SRR2868004 | Drought Stress (root) | 5.276 |
| SRR2967015 | Control (root) | 5.138 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.353 |
| SRR9715740 | Leaf | 14.179 |
| SRR9715741 | Leaf | 5.980 |
| SRR9715739 | Root | 0.852 |
| SRR9715742 | Root | 2.330 |
| SRR9715743 | Root | 1.606 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.952 |
| SRR8749028 | MeJA induced 9h | 2.105 |
| SRR8749029 | MeJA induced 9h | 1.436 |
| SRR8749030 | Uninduced | 1.455 |
| SRR8749031 | Uninduced | 0.856 |
| SRR8749032 | Uninduced | 1.280 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.725 |
| SRR8400027 | Control - Root | 7.133 |