Gene detail

Gene detail information of Glyur002392s00037545

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G22200.1	0	potassium transport 2/3
NR	XP_003593018.1	0	Potassium channel [Medicago truncatula]
COG	YP_005071944.1	1.00E-45	cyclic nucleotide-binding protein [Arthrospira platensis NIES-39]
Swissprot	tr\|Q38898\|AKT2_ARATH	0	Potassium channel AKT2/3
trEMBL	tr\|G7IPF9\|G7IPF9_MEDTR	0	Potassium outward rectifying channel protein {ECO:0000313\|EMBL:AES63269.1}

Sequence

Transcript Sequence

>Glyur002392s00037545.1
ATACCCCACCCACCTTAATCTTCTACTTCAAATTGGTCTTATATAGCATAGCATATATAAACACAATCAATCAACTTCTAAATGCTGCCATTAGAAGTTAGAACTACTCTCTATCATCAAAACCTCATTTTTCTTAGGGGTCAGTACTATACTTACCACCACTTTAGTGTGGTACATACATATTGAGAGTACCTNCCACTCTCCTACACCCACAAGGCCACCTTATAATATCATCATCATCATAAGAACTCTTGTTCCTTGTGTTGAGCATATGCCCTCTCTTCCTTTTTTCTTTTAACCAATATTTTTCTTAGCTAGGATCTATTCTACAACCTCTTTCTCTCCACCCCTCCTTCAGGAATACAGAGACAATTTTTTAGCTGAAAATTAGTCCACCTAGAGTATATTTTTGTCTTGTAGCTAGCTAGAAGTAAGAAATGGAGAACAATTTCAGTTCATATAATCCTCACATGGCCTCTAGCATGAACAAGAGTTACAGCAAGCACCAGGAGCATGATCCTTCAGGACAGCATGATCATCTCAAAGAAGATTATACATCTTTTCCATCTTTCAATCTGAGGAATGTTTCAAAGCTCATTCTTCCCCCACTTGGTGTCTCAAAACAGAACCCGGTGAACTCAAAAGGGTGGATCATATCCCCAATGGATTCCAGATACAGGTGTTGGGAGAGTTTGATGGTTCTTCTTGTAGCTTATTCTGCATGGGCTTATCCCTTTGAAGTTGCTTTCATGCACTCTTCTCCAAATAGGAAACTCTATATTGTGGACAATATTGTTGATCTTTTCTTCGCTGTTGACATTGTTTTGACATTCTTCGTGGCTTACAAAGACCCAACAACTCATCTACTAGTTCGAGACTCCAAAAAGATTGTTCTCAGGTACTTGTCAACATGGTTCCTGATGGATGTGGCATCAACTATACCATATGAGGCAATAGGGTATTTGTTAACAGGCAAACACAAAGTGGGTCTCGCTTACTTCCTGTTGGGAATGCTCAGATTTTGGCGAATCAGACGGGTCAAGCAATACTTCACAAGGCTTGAGAAAGACATCAGGTTCAGCTATTTCTGGGTCAGATGTGCTAGGCTCCTTTCTGTGACACTTTTTTCAGTGCATTGTGCTGGGTGCCTCTATTACATGCTAGCAGATCGGTACCCCTACCAAGGGAAGACATGGATTGGAGCTGTGATCCCAAACTTCCGAGAGACAAGCCTTCGGATCAGATACATTTCAGCCATCTACTGGTCCATCACTACCATGACCACTGTAGGCTATGGTGACCTCCATGCTGTGAACACCATGGAAATGATCTTCATTATTTTCTACATGCTCTTCAACCTTGGCCTAACTGCTTACTTGATTGGCAACATGACAAATCTTGTTGTCGAAGGAACTCGNCGCACCATGGAATTTAGAAATAGCATTGAAGCAGCATCGAACTTTGTGTGCCGAAATCGGTTGCCTCCAAGGTTGAGAGAGCAGATCCTGGCTTACATGTGTTTAAGATTTAAGGCAGAGAACTTGAATCAGCATCAGCTCATTGAACAGCTACCAAAGTCAATTTGCAAAAGCATCTGCCAGCATTTGTTTTTCCCAACTATAGAGAAAGTCTATCTCTTCAAAGGCGTCTCAAAAGAAATTCTTTTGTCCCTCGTTGCAAAAATGAAGGCAGAATACATACCACCTAGGGAGGATGTTATCATGCAAAATGAAGCACCAGATGATGTTTACATTATAGTGTCTGGTGAAGTGGAGATCATTGATAGTGTAATGGAGAAAGAGAGAACTTTTGGGACTCTACACACAGGAGACATGTTTGGGGAAGTTGGTGCACTTTNCTGTAGACCTCAGAGCTTTACCTACAGAACCAAGACTCTCACACAACTCCTGAGGCTGAAAACCAATATTCTTATAGAAGCAATGCAGACTAAGAAAGAAGACAATATTCAAATACTCAAAAATTTCCTTCAGCATTTCAAGCAGCTCAAGGATCTGAGTATCCAAGATTTAATGGTGGAGAATGTGGAAGAAGAGGATCCTAACATGGCTGTGAACTTGTTAACTGTGGCCAGCACAGGCAATGCTGCTTTTCTTGAGGAGCTTCTAAGGGCAGGTTTGGATCCTGACATTGGAGACTCCAAAGGGAAAACTCCATTGCACATAGCAGCATCAAATGGGCATGAAGAGTGTGTTAGAGTTTTACTCAGGCATACATGCAACATCCATATAAGAGACATGAATGGTAACACTGCACTATGGGATGCTATAGCATCAAAACATTACTCCATATTCNGGATCCTCTACCAGCTAGCTGCANTATCTGATNCATACACAGCAGGCAATCTCCTATGCACAGCAGCAAAAAGAAANGACTTAACAGTGATGAATGAGCTTTTAAAGCAAGGATTAAACATAGACTCCAAAGATCACCATGGCATGACAGCAATCAAAGTTGCCATGGCAGAAAATCATGTGGACATGGTTCAGTTGCTTGTCATGAATGGTGCAGACGTAGCCGATGTACATACACATGAGTTCTCTGCATCCACCTTAAATGAAATGCTGCAGAAGCGTGAAATTGGGCACCTGATAACTGTAAGTGAGGCCATGCCTTGTGAAGTTGNAATAAAGGGGAGAAATCAAGAGGAACAGAAGCACATTTGGGGAAGATATAATGGACCACCAGAGTGTCCAAGAGTAAGCATATATAGGGGTCACCCCACAGTGAGAAGAGAAAGAGGTTTCATGGAAGCTGGGAGGCTAATAAGGTTGCCTGATTCATTAGAGCAGCTCAAAACTATTGCAGGTGAAAAATTTGGGTTTGATGCAAGAGATGCAATGGTGACAAATGAAGAAGGAGCAGAAATAGACTCTATTGATGTGATCAGAGATAACGATAAACTCTTTTTTGTTGAATAGTCCATTGATATGCAAAATGTCAACTGTAAATATATAAGTTTGCACAATTGGGTCATTTTGTTGCCTTCTTCCTGTTGTCATAAAGAAGACAAATAATTTCCTTTTTTTATGGAAAAACAAATAATTTCCTATTGTATAAAAAACTGAAAAATATAATTGACATCCCCCCTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02392	21260	28496	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006811 ion transport

GO:0006813 potassium ion transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0005216 ion channel activity

GO:0005249 voltage-gated potassium channel activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002392s00037545.1	PF00520.26	Ion_trans	115	318	7.10E-23
Glyur002392s00037545.1	PF00027.24	cNMP_binding	421	504	7.90E-13
Glyur002392s00037545.1	PF12796.2	Ank_2	549	631	3.00E-16
Glyur002392s00037545.1	PF12796.2	Ank_2	643	700	4.20E-08
Glyur002392s00037545.1	PF11834.3	DUF3354	759	832	6.40E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.651
SRR1783600	control	4.622
SRR1783602	moderate drought stress	10.288
SRR1811619	moderate drought stress	10.331

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.665
DRR006520	Root Summer glycyrrhizin high producing strain	26.424
DRR006521	Root Winter glycyrrhizin high producing strain	2.413
DRR006522	Root Winter glycyrrhizin high producing strain	2.449
DRR006523	Root Summer glycyrrhizin low producing strain	6.855
DRR006524	Root Summer glycyrrhizin low producing strain	6.874
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.725
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.653

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.330
SRR2868004	Drought Stress (root)	3.009
SRR2967015	Control (root)	1.375

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	98.168
SRR9715740	Leaf	64.872
SRR9715741	Leaf	104.275
SRR9715739	Root	3.922
SRR9715742	Root	75.519
SRR9715743	Root	62.490

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.150
SRR8749028	MeJA induced 9h	0.052
SRR8749029	MeJA induced 9h	0.019
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.012
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.280
SRR8400027	Control - Root	9.461