Gene detail

Gene detail information of Glyur002392s00037543.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G36370.1	0	serine hydroxymethyltransferase 7
NR	XP_004485486.1	0	PREDICTED: serine hydroxymethyltransferase 1-like [Cicer arietinum]
COG	YP_361350.1	1.00E-100	serine hydroxymethyltransferase [Carboxydothermus hydrogenoformans Z-2901]
Swissprot	tr\|Q9LM59\|GLYC6_ARATH	0	Serine hydroxymethyltransferase 6
trEMBL	tr\|G7IPE1\|G7IPE1_MEDTR	0	Serine hydroxymethyltransferase {ECO:0000256\|RuleBase:RU000585}

Sequence

Transcript Sequence

>Glyur002392s00037543.1
TGGGAAGCAGTGATATTCATTCATCACGTCAGAATATCAGATACGCAACAAGCAGCAGCGTCTAGGTGCATCCCCCATCAAACTCGACCCCTCTCCATTTNTCTCATTAGGGTTAGGGTTTTCATCTTTGCCCCATTCATTCATCTTCAATCATATTCCTCGTACAAAATTTCAATGACCCACCCTTCCCTTTTCCTCACAACACAATCCATATTCAACCACCGCTGCTGCAACTGCTCTCCTCGCTTCCCCTGTTCTTCTTCCTGTTGTTGCCGTTGTTCTCTTTGTTCCTAGAATATCGCATCCTATCGATTTCGCAGCTCGTTTGATGGACCTCTCTCACCATCAATCCAACCTNTCTCTCGGTTTCTCCTCNTCTCACGCATCGCCACCGCCCCGCCCCCACATCCCCGACGACTCNATCTCGCTGCACCTGGAATCCAGNCTCCGCGACCCTTCGCACCCNCTCCCTACGGTTCCGCTGCAGCTTCTGGAACCGCAGACGGAGAAGGAGAATGGGAGCTTCGATGNCGAATCGGAGGACGACGAGGAGGATAGGGAAGTCGAGGAGTTTCGCATCCTAGGGCACTCAATGTGCCTCAAGAGACGAAGGGATTGCGAATCCTCTGCGGTCGCTACCAAGAGGGTTTCCGTGGAACCCGATCTCGACGCGCGAAGAGCCGCCGTTCGATCGTGGGGCGGGCAACCTCTCCACGTGGCAGACCCTGATGTATACGAGATAATGGAAAAAGAGAAGAAGCGCCAATTCAGAGGGATTGAATTGATAGCTTCTGAGAATTTCGTGTGTAGGGCTGTGATGGAAGCGCTTGGGAGCCACTTGACGAATAAATACTCGGAGGGAATGCCCGGTGCACGATACTATGGAGGGAACCAATACATTGATGAAATCGAAANGCTTTGCTGTGAGCGTGCATTGGCAGCGTTCAATCTCGACCCNAAGTGTTGGGGTGTGAACGTTCAGNCTTATTCGTGTACCTCTGCTAACTTTGCTGTGTACACGGGATTGTTGTCCCCTGGGGATCGTATCATGGGGTTGGATACTCCATCTGGAGGGAATACAAGTCACGGGTACTATACCCCTAATGGGAAGAAAGTTTCGGGGGCTTCTATATTCTTTGAGAGTTTACCTTACAAGGTTAACCATCAAACCGGTTATATTGATTATGATAAGCTTGAGGAAAGGGCACTTGATTTTCGTCCCAAGATACTTATTTGTGGTGGGAGCTCGTACCCTCGGGAATGGGATTATGCTAGGTTTAGGCACATTGCGGATAAATGTGGAGCTGTCTTGTTGTGTGACATGGCACAGATTAGTGGACTAATTGCAGCCAAGGAGTGTGTGAACCCTTTTGACTATTGTGATGTTGTTACTTCGACAACTCACAAGAGTCTTCGAGGTCCAAGGGGAGGTATAATTTTTTATCGGAAGGGTACAAAACCGAGGAAGAGAGGGATACTTCTAAGTCAGGGAAACGAAAGTGATCAATATGACTTTGAAGAAAAGATAAATTTTGCTGTTTTTCCATCAATGCAAGGNGGGCCTCACAATAACCACATTGCTGCACTTGCTATAGCGTTAAAGCAAGTGGCTACCCCTGAGTATAGGGCATACATGCAACAGGTGAAGAAGAATGCTCAAGCTTTAGCATCTGCTTTATTGAGAAGAAAATGCCGCCTAGTAACTGGGGGTACAGACAACCATTTATTGCTTTGGGATTTAAGGCCCCTTGGATTGACAGGTACCCCTGCCATGACTTCAAGAGGGTGTTTGGAGGCCGATTTTGAGNCGATGGCTGAATTTCTCTTTAGAGCTGCACAAATTGCAAACATGCTGCAGAGGGAGCATGGGAAATTGCAGAAGACTGTTTTGGACGGACTTGAGAGCAATAGGGACANTATTGAGCTCCGGGCACGGGTTGAAGCTTTTGCAACTCAGTTTGCAATGCCAGCTTTTGTCTTCTCTGCATTGTACACAGTTGTCAGTGATTTGCAATGTGGTACAAGACAGTACATAGTGGGTACCGTTGTTGAGCATCCTGTTCCTGCCTTGATGGAGGGTGCACCATCCCTGCTGAATGCAGCAAGTTGGTTGGAACAGAGATCCTTGATCAACCACACTGAGTACAGAATTCTTCTGATTATGGTATCAGAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02392	2720	7999	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00600	glyA, SHMT	EC:2.1.2.1	Carbon metabolism	map01200
			Biosynthesis of amino acids	map01230
			Glyoxylate and dicarboxylate metabolism	map00630
			Methane metabolism	map00680
			Glycine, serine and threonine metabolism	map00260
			Cyanoamino acid metabolism	map00460
			One carbon pool by folate	map00670
			Antifolate resistance	map01523

Gene Ontology

biological_process

GO:0006544 glycine metabolic process

GO:0006563 L-serine metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0004372 glycine hydroxymethyltransferase activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002392s00037543.1	PF00464.14	SHMT	129	478	3.00E-150

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.508
SRR1783600	control	22.485
SRR1783602	moderate drought stress	23.326
SRR1811619	moderate drought stress	22.951

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.933
DRR006520	Root Summer glycyrrhizin high producing strain	27.501
DRR006521	Root Winter glycyrrhizin high producing strain	29.801
DRR006522	Root Winter glycyrrhizin high producing strain	29.031
DRR006523	Root Summer glycyrrhizin low producing strain	30.472
DRR006524	Root Summer glycyrrhizin low producing strain	30.817
DRR006525	Leaf Summer glycyrrhizin high producing strain	26.892
DRR006526	Leaf Summer glycyrrhizin high producing strain	26.878

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	35.207
SRR2868004	Drought Stress (root)	36.074
SRR2967015	Control (root)	33.584

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	33.069
SRR9715740	Leaf	35.619
SRR9715741	Leaf	35.340
SRR9715739	Root	24.083
SRR9715742	Root	31.078
SRR9715743	Root	30.604

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.309
SRR8749028	MeJA induced 9h	32.756
SRR8749029	MeJA induced 9h	15.514
SRR8749030	Uninduced	13.093
SRR8749031	Uninduced	17.685
SRR8749032	Uninduced	13.019

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	38.166
SRR8400027	Control - Root	33.065