Gene detail information of Glyur002387s00044436 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G05830.1 | 3.00E-49 | RING/FYVE/PHD zinc finger superfamily protein |
| NR | XP_007141812.1 | 4.33E-95 | hypothetical protein PHAVU_008G227700g [Phaseolus vulgaris] |
| trEMBL | tr|V7BBG2|V7BBG2_PHAVU | 2.00E-95 | Uncharacterized protein {ECO:0000313|EMBL:ESW13806.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02387 | 35713 | 39081 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002387s00044436.1 | PF12906.2 | RINGv | 72 | 130 | 8.10E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.512 |
| SRR1783600 | control | 5.764 |
| SRR1783602 | moderate drought stress | 2.519 |
| SRR1811619 | moderate drought stress | 2.452 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.818 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.644 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.470 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.815 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.158 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.146 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.419 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.492 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.674 |
| SRR2868004 | Drought Stress (root) | 8.802 |
| SRR2967015 | Control (root) | 13.475 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.870 |
| SRR9715740 | Leaf | 1.529 |
| SRR9715741 | Leaf | 1.577 |
| SRR9715739 | Root | 8.643 |
| SRR9715742 | Root | 6.062 |
| SRR9715743 | Root | 6.571 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.946 |
| SRR8749028 | MeJA induced 9h | 4.282 |
| SRR8749029 | MeJA induced 9h | 4.202 |
| SRR8749030 | Uninduced | 2.077 |
| SRR8749031 | Uninduced | 0.502 |
| SRR8749032 | Uninduced | 1.447 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.816 |
| SRR8400027 | Control - Root | 13.295 |