Gene detail

Gene detail information of Glyur002385s00047564.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G60580.1	1.00E-28	C2H2-like zinc finger protein
NR	XP_003517016.1	4.01E-110	PREDICTED: zinc finger protein ZAT9-like [Glycine max]
Swissprot	tr\|Q9M202\|ZAT9_ARATH	8.00E-60	Zinc finger protein ZAT9
trEMBL	tr\|K7K3N0\|K7K3N0_SOYBN	1.00E-110	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G32981.1}

Sequence

Transcript Sequence

>Glyur002385s00047564.1
ATGGAGAAGCACAAGTGCAAGCTNTGTTTCAGGAACTTCGCTAATGGGAGGGCGTTGGGGGGTCACATGAGGTCTCACATGATGAACCTACCGAAGCCGAACGAGTCGCCACCGGCGGTTCAACTCAGCTTCGAGGCCGAGTCATCGTCCTCGTTCGAGAACGACGTCGTCGACAAGGGTGGTGGTGGTCTTTCCCTTTCCTATGGGCTGAGGGAGAACCCGAAGCGGAGCTTCCGGTTCGTGGATCCTGAGTTCCTCGACGCCGGGTTGGTGATCCTCCAGGACAGGGAGAGCGAGACCGAGTCCTCAAGGAACCCGACCCGGCGACGATCCAGGAATTACGAGTCGGCTAGTTCCGCCTCGGACACGACCACAGAGGAAGACGTGGCATTCTGTCTCATGATGCTGTCTCGCGACAGGTGGAAGCGACAAAGACAGCATCATGAGTTAATGATGGAAGAGGAACAAGAAGAAGAAGAGGAAGAACAATACGAAGAAGAGGAAGAAGAAGAAGAGGAGGAAGATAGTGAGGATGATGAATCCGAGGAAGAGGAGGAGGAGGAGGAGGTGAAACCGTGCAAGGCGAATACGAGGGTACGAGGAGGAAGGTACAAATGCGACACGTGTAACAAGGTGTTTCGTTCGTATCAAGCGCTGGGTGGACACAGGGCGAGTCACAAGAAGATCAAGGTAGTTGTTGAGGAACCTGAACCGGAGCACGAGAACAACAACAACAATAATGGGGATCAAGGTGGTTCCTCTGTTGTTCCAGAGAAGAAGATTCACGAGTGCCCCGTTTGCTTTCGGGTCTTTGCTTCGGGTCAAGCTCTTGGTGGACATAAGAGAACCCATGTTATTGGGTCAACAGCGACAGCAACGGCCACGGCAACAGTTACAATAGCAGCAGCAACAAACGCAACCACCGANGCTCGAAGTTCCGCAAAGTTAGGAGACAGTACTTTGATAGATCTCAACCTTCCTGCTCCCATGGATGATGATGATGCTAGCCAAATTGAGGATTCTGCTGTTTCCGATGCAGAATTTGTCAAATCTCGTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02385	18578	19636	-

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2
EAR motif-containing Proteins	C2H2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002385s00047564.1	PF13912.1	zf-C2H2_6	4	27	0.00031
Glyur002385s00047564.1	PF13912.1	zf-C2H2_6	204	228	6.40E-10
Glyur002385s00047564.1	PF13912.1	zf-C2H2_6	261	284	1.30E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.350
SRR1783600	control	2.177
SRR1783602	moderate drought stress	2.132
SRR1811619	moderate drought stress	2.157

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.705
DRR006520	Root Summer glycyrrhizin high producing strain	1.116
DRR006521	Root Winter glycyrrhizin high producing strain	0.210
DRR006522	Root Winter glycyrrhizin high producing strain	0.203
DRR006523	Root Summer glycyrrhizin low producing strain	2.533
DRR006524	Root Summer glycyrrhizin low producing strain	1.454
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.874
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.694

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.034
SRR2868004	Drought Stress (root)	7.156
SRR2967015	Control (root)	6.671

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.016
SRR9715740	Leaf	1.472
SRR9715741	Leaf	1.058
SRR9715739	Root	4.850
SRR9715742	Root	4.980
SRR9715743	Root	3.411

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.234
SRR8749028	MeJA induced 9h	0.314
SRR8749029	MeJA induced 9h	0.320
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.071
SRR8749032	Uninduced	0.200

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.277
SRR8400027	Control - Root	9.952