Gene detail

Gene detail information of Glyur002383s00031060.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G18900.1	3.00E-128	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	XP_003594052.1	0	Prolyl 4-hydroxylase alpha subunit-like protein [Medicago truncatula]
COG	YP_004753320.1	6.00E-46	peptidyl prolyl 4-hydroxylase-like protein subunit alpha [Collimonas fungivorans Ter331]
Swissprot	tr\|Q8LAN3\|P4H4_ARATH	5.00E-161	Probable prolyl 4-hydroxylase 4 (Precursor)
trEMBL	tr\|G7IFM8\|G7IFM8_MEDTR	0	Prolyl 4-hydroxylase subunit alpha-like protein {ECO:0000313\|EMBL:AES64303.1}

Sequence

Transcript Sequence

>Glyur002383s00031060.1
ACACCAAAGTCCTCTCACATAGTTTCTTTTACTCCGCGCGGTATATTCATGTGAACATATGAGAACCTAAACCATTTGTGAATATGAACGAGAAAATCGTGTATCCCATCACATGTTTAAAATGAATAATATCGTGTTAAGAGAAATAATAATAGAAGCTAGGATTAATTAACGATTTTGGGAATTAATTTCTTTTATTTAATATTTTCACCCGCTGATAGAGATAAATCATTTAAAGAGTTCCCAGTCGTGGCAATAGTTATTTAAAAAAAATATAATTTAATTAAGACAATAAAGTCAAACATTCCCTTAATTGTCTTTTAGATTAGATTAGATTGAAGTGGTATGGTATAAGCAAAGCTTGAAGTTAGTTAGAATTGAAAAGGAAGGGGAGAAAAGGAAATGAGTGTGATTTGTAGGGTTTGGTGCTTGGTGGTAGCATTGGTGCTGATCTCCGAATTCCATGGGGCGTGGGGTTCCTACGCAGGTTCTGCAAGTGCGATCATTGACCCCACCAAGGTGAAACAGGTCTCGTGGAAGCCAAGAGCTTTCGTTTACCAAGGTTTCCTCACGGATTTGGAATGCGACCACTTGATTTCCATAGCCAAATCGGAGCTCAAGAGATCCGCGGTGGCGGATAATTTGTCTGGACAGAGCAAGTTGAGCGAAGTCAGAACAAGCTCTGGCATGTTCATTTCCAAGAACAAGGATCCCATTGTTTCTGGTATTGAGGACAAGATTTCATCATGGACCTTTCTTCCAAAAGAAAATGGAGAAGACATACAAGTATTAAGATATGAGCACGGGCAGAAATATGACCCACATTACGATTACTTTGTTGATAAAGTTAATATAGCTCGGGGCGGACACCGGGTTGCCACNGTTCTCATGTATCTCACTAATGTGACCAGAGGTGGTGAAACAGTGTTCCCTAATGCAGAGGTATCTCAACACAGAGGTTCTGAAACAAGTGAGGATCTCTCTGATTGTGCCAAAAAAGGAATAGCAGTGAAACCGCGAAGAGGGGATGCACTTCTTTTCTTTAGTCTCCACCCAAATGCTATCCCAGACACCCTCAGTCTCCATGCAGGATGCCCTGTAATTGAAGGTGAGAAATGGTCAGCAACAAAGTGGATTCATGTGGATTCATTTGATAAGACGGTGGGAGCTGAAGGGGACTGCACTGATCAGCATGAAAGCTGTGAGAGATGGGCTGCCCTTGGAGAATGCACTAATAATCTTGAGTATATGGTTGGAACTCCAGGACTTCCTGGCTACTGTAGGAAAAGTTGCAAGACATGTTAAGAAGTGTTACTGAATGCTTTCCAGATTCCATGTGGTAATTTTTGGCATACTTTCTAACTTTTTGGTGGATTGTAATGTATTCTATTCTATTCTATTCTATTCTATGTCTCATTATATTGGTTAGCTCTCTGATACTGTTCTAGTCTAGTGTCATGGTCACGCTTCAAGAGGTACATTTGTGTGTTGTGAAGCTGTAATGGTAGGCAATGTGGGATTCACCATTTTTTCGTTGGTTACTTTGTATGTAAAACGACAAAAAAGAGAGTATACGTTGATTTTCTCCCTTGTTATGGTTTCCCCTCATTCTGGTTTTTATCAATTTGTTACATACTTTTGTCGAATGAGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02383	22932	27443	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00472	P4HA	EC:1.14.11.2	Arginine and proline metabolism	map00330

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016491 oxidoreductase activity

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

GO:0031418 L-ascorbic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002383s00031060.1	PF13640.1	2OG-FeII_Oxy_3	127	246	6.20E-12
Glyur002383s00031060.1	PF01549.19	ShK	260	300	0.0019

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.252
SRR1783600	control	24.260
SRR1783602	moderate drought stress	19.912
SRR1811619	moderate drought stress	19.604

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	30.882
DRR006520	Root Summer glycyrrhizin high producing strain	30.174
DRR006521	Root Winter glycyrrhizin high producing strain	20.878
DRR006522	Root Winter glycyrrhizin high producing strain	20.168
DRR006523	Root Summer glycyrrhizin low producing strain	31.559
DRR006524	Root Summer glycyrrhizin low producing strain	32.083
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.931
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.104

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	77.347
SRR2868004	Drought Stress (root)	76.227
SRR2967015	Control (root)	72.550

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	30.508
SRR9715740	Leaf	30.556
SRR9715741	Leaf	33.722
SRR9715739	Root	19.829
SRR9715742	Root	24.595
SRR9715743	Root	26.060

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	53.355
SRR8749028	MeJA induced 9h	49.553
SRR8749029	MeJA induced 9h	38.257
SRR8749030	Uninduced	32.785
SRR8749031	Uninduced	22.739
SRR8749032	Uninduced	20.446

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	67.757
SRR8400027	Control - Root	76.063