Gene detail

Gene detail information of Glyur002383s00031059

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G21510.1	1.00E-44	histidine-containing phosphotransmitter 1
NR	AFK43296.1	6.17E-92	unknown [Lotus japonicus]
COG	YP_004173540.1	9.00E-06	hypothetical protein ANT_09060 [Anaerolinea thermophila UNI-1]
Swissprot	tr\|Q9ZNV9\|AHP1_ARATH	1.00E-69	Histidine-containing phosphotransfer protein 1
trEMBL	tr\|I3SSQ4\|I3SSQ4_LOTJA	2.00E-92	Uncharacterized protein {ECO:0000313\|EMBL:AFK43296.1}

Sequence

Transcript Sequence

>Glyur002383s00031059.1
CTTAGGTTAGAACTGACATAAAGAGAGGGATTGGGATTGGGAGTGGTGGTGGGGTCTCGATTCTTTCTGCGAGAGGACACGAAAGCAAAGCGCAAATCCAGAGAGGAATAAAAAGGGGGCCACTCTCTTCCTACGGGGCCAGTCAGTCCAGAGAGACGAGTAGACCAACACAACACCACCAACCTTGAAATTTGCTCCTCTGCCCTCTCTTTCAAGGTATCCCCTACCCTCCATTTCTTCTGATTGAGCCATTATTCCCTCAAAAATCTAAACTTGAAGCCCCAAACTGTACTGGGTCGGTCACTGCTTCTTCTGTAACAACAACAACAACAACAACAACAAGTGGCCTTTGCTGTGCTGTGTGAGAAGCAGAGAAGCATGGAGGTGGGTCAGATGCAGAGACAGTGGGTGGACTACATCAAATCCCTGTTCATGGAGAAGGGCTTCCTGGATGGTCAGTTTCTGCAACTTCAGCAGCTACAAGATGAGAATAACCCTGAGTTTGTGGTGGAAGTGGTGTCTCTCTTCTTTGAAGATTCTGAGAGGCTTCTCAAAGATCTGACCTTTGCTCTGGATCAGCAAGGTGTTGACTTCAAAAAAGTTGATGCTCATGTTCACCAGTTAAAGGGTAGCAGCTCAAGCATAGGCGCACAAAGGGTAAAAAATTCCTGCATTGCTTTCCGCAACTTCTGTGAGGAACAAAACATAGATGCGTGCCTCAAATGTCTGCAACAAGTGAAGCAAGAGTACTGCCTTGTCAAGAACAAGCTTGAAACACTGTTCAGGCTTGAGCAGCAGATTGTGGCAGCTGGTGGCTCAATCCCTATGATGGAACTGAGTTTCTAAGTGGGTAGATTTGTAGAGATGCTTGTATTGTGATCCTCTTCTCCTTTAAGGAATTCTATTTTATCTTATGCCCCTGGTGAATGTATGNATTTTTACGAGGAGAGAAGTTTTCATCCAGTGTACCTTTTTTCTTCACAAGAAAGCACTTCATGATTTGTAATCTTTTGCATGCTTTAATGAAAGATTAATGGCACACCACTAATGAACTTGCCCCTTTTTCTCTCTCCCAGAAAGGAAGAAAAAAATTGTATGAGAACAATCCTTTGAGCACCAAACATTTGGATCACAAATATGTTTCCACCATAGGAATGAATAGATTACCCTTCATCTAGACTTCCTTGAATTGATATGGGCTAGTTGAAACCAAGACCCAGGTTTGCTGCAATCAGTGATTCCCCACATTTACGGAGTCAACAGATCGTGACCGCTGGATTGAGAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02383	17753	19913	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0000160 phosphorelay signal transduction system

molecular_function
GO:0004871 signal transducer activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002383s00031059.1	PF01627.18	Hpt	45	124	1.10E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	72.852
SRR1783600	control	73.320
SRR1783602	moderate drought stress	77.627
SRR1811619	moderate drought stress	76.160

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	134.520
DRR006520	Root Summer glycyrrhizin high producing strain	135.024
DRR006521	Root Winter glycyrrhizin high producing strain	45.123
DRR006522	Root Winter glycyrrhizin high producing strain	42.663
DRR006523	Root Summer glycyrrhizin low producing strain	108.550
DRR006524	Root Summer glycyrrhizin low producing strain	105.401
DRR006525	Leaf Summer glycyrrhizin high producing strain	42.464
DRR006526	Leaf Summer glycyrrhizin high producing strain	41.762

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	209.544
SRR2868004	Drought Stress (root)	236.450
SRR2967015	Control (root)	247.677

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	93.778
SRR9715740	Leaf	105.407
SRR9715741	Leaf	99.673
SRR9715739	Root	54.316
SRR9715742	Root	102.343
SRR9715743	Root	91.796

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	100.609
SRR8749028	MeJA induced 9h	98.244
SRR8749029	MeJA induced 9h	86.948
SRR8749030	Uninduced	86.355
SRR8749031	Uninduced	36.179
SRR8749032	Uninduced	87.720

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	175.856
SRR8400027	Control - Root	186.035