Gene detail

Gene detail information of Glyur002383s00031057

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G18860.1	0	inosine-uridine preferring nucleoside hydrolase family protein
NR	XP_004486297.1	0	PREDICTED: uncharacterized protein LOC101496568 [Cicer arietinum]
COG	YP_004671587.1	1.00E-17	hypothetical protein SNE_A12190 [Simkania negevensis Z]
trEMBL	tr\|G7IFM3\|G7IFM3_MEDTR	0	Inosine-uridine preferring nucleoside hydrolase {ECO:0000313\|EMBL:AES64298.2}

Sequence

Transcript Sequence

>Glyur002383s00031057.1
ATGTTTCCTCCAATGAGGTTCTGGCTAGCTGTGGTGTTGGTTATATCAGTAACCTTTGGAGCTGCTTTGCATAATAATACNGTGGAAGGATTCAGCAGAACTCCTCGTCGGATTCTTTTGGATACAGATGTTGATACTGATGATTTCTTTGCTCTTCTCTATCTTTTGAAGCTCAACAGATCAGAATTTCAATTGGAGGGAATTACCGTCAATGCAAATGCTTGGACTAATGCTGGGNATGCTGTGAATCAAGTTTATGACTTACTTTACATGATGGGGAGAGATGATGTAGCTGTTGGAGTGGGAGGTGAGGGTGGAATACTCCCAAATGGTACCATACTCCCAAATGTTGGTGGATATCTTCCAATTATAGAACAGGGAATGACAACTGCAGGAGGTTGCAGATACAGGCAGGCCATTCCTGTAGGTCTTGGAGGGCGCTTGGATATCGATACTAACTATGGCATCCGGAAAGCTTTCCTTCCACAGGGCAAAAGGAAATATACTCCCCTACAACAACCAACTGCTCAGCAAGTGCTGATTGACAAAATATCTGCAGGTCCCATAACTGTGATTGTGACTGGAGCACATACAAACATGGCCATTTTCCTTATGAATAACCCACAACTAAAGAAAAATGTGGAGCATATTTACATCATGGGTGGTGGTGTAAGGTCAAGAAACCCAACTGGTTGTTGCCCCAAAAATGCTTCCTCTTCCTGTGTACCTAAGCAGTGTGGTGATCATGGCAATTTATTCACAAATTTCAATGCCAACCCTTATGCAGAGTTCAACCTTTTTGGAGACCCTTTTGCAGCATATCAGGTGATTCATTCTGGTATTCCTGTTACCCTTGTTCCTCTTGATGCAACAAACACAATCCCCATCAGTGAAGAATTCTTCAATGAATTTGAAAAGAGTCAAGACACATATGAGGCACAATACTGTTTCAAGTCCTTGAAAATGGCTCGTGATACTTGGTTCGACAATCAATTTTATACGAGTTATTTTATGTGGGACTCTTTCACATGTGGTGTAGCAGTCTCAATAATGAGGAACTCCAATAAGAATAATAAAGGGGAAAATGAATTTGCAGAAATGGAGTATATAAACATAACTGTGATTACTTCAAACAAACCATATGGGATATCTGATGGCTCCAATCCCTTGTTTGATGGCCTCAAAGTTCCTAAGTTCAATCTAAAGAAAGGTGGGGTGCATAGTGGTCATGTTCAACAAGCACTTAGGGATCCATTTTGCTTTGTGAAGAATGGGAAAGGGAGATGTCAGGATGGTTATACATTAGAGGTGAATGGTCAAGACTCAGTGAAGGTACTTGTTGCCACAAAAGCAAAGCCTAACCGGGATGTAAGGAGCCCACTTGACAGAGAATACTTCAAAAGCTTCTTGAATATTCTAAAGCAATCACACCATGCTGGGAGGTTCAACTTCACTACACAGTTTCCTTACTATGATGAAGTAACTTACAGGCCAAATTTTCAAAACAGAACACTGGGGAAACCTGTTGTGTTTGACATGGACATGAGTGCAGGAGACTTTCTTGCTCTATTTTACCTCCTCAAAGTTCCTGCTGAAGTGATCAACCTCAAGGCAATCATTGTGAGCCCAACTGGGTGGGCAAATGGTGCAACAATAGATGTCATCTATGACTTACTGCACATGATGGGTCGTGACGATGTCCCAGTTGGTGTAGGTGATGCTTTTGCAATGAATCAGTCAGACCCAATATTCCCACCTGTTGGAGACTGCAAGTATGTTAAAGCCATTCCCCACGGAAATGGTGGGCTTCTTGACTCTGACACTCTCTATGGACTTGCTCGTGATCTCCCTCGTAGCCCCAGAAGGTATACAGCAGAAAACTCAGTGAAGTTTGGAGCTCCTCGGGATACCGATCACCCTGAACTCAGACAACCACTAGCTATGGAAATTTGGGAGTCTATGTTGCAGTCATTGAAACCAGGGTCTAAGATCACAGTATTAACCAACGGACCCTTGACTAATTTGGCAAAGGTTATATCAGTAAAAAATATAAGCTCAAGAATTCAGGAGGTTTATGTAGTTGGGGGACATATCAGCAGGAATGCCATGGACAAAGGAAATGTCTTTTCTGTTCCTTCCAATCAGTATGCAGAATTCAATATGTTCCTGGATCCTTTAGCAGCCAAGACAGTGTTTCAATCACAAGTTAACATCACACTCATTCCACTTAGTATCCAGCACAAAGCAAGTTCGTTTTCAAGTATTTTATATTGGTTCAGTAGGATAGAAAAAACACCTGAAGCAGTGTTTTGCAAGCATCTGCTGTCGAGGCTATACCGTGCCGTTGTACTGGCTGATGGCCCTTCAAACCTAAATGCAAAATTTGAGGTCAAATCCGTGAAAGTCTTGGCAGAAGGGGTTGAATCTACTGATGGAAAAATTGTGGTGGATGAGAAAAGTGGAAAATCAGTGAGAACTTTAAGTCATGTTGATGCCAAGGCTTATCATGAGATGTATGCAAAGAGGCTAGGTGATCCGAACCAATCTGCTAAGGTAGGAAGCTTTGAAGAACAAAGGAGAAAATGGAGTCATCCACATGATAGTAGTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02383	9625	16007	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002383s00031057.1	PF01156.14	IU_nuc_hydro	35	377	1.30E-40
Glyur002383s00031057.1	PF01156.14	IU_nuc_hydro	507	843	1.30E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.400
SRR1783600	control	1.370
SRR1783602	moderate drought stress	1.172
SRR1811619	moderate drought stress	1.148

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.570
DRR006520	Root Summer glycyrrhizin high producing strain	4.583
DRR006521	Root Winter glycyrrhizin high producing strain	0.298
DRR006522	Root Winter glycyrrhizin high producing strain	0.267
DRR006523	Root Summer glycyrrhizin low producing strain	1.957
DRR006524	Root Summer glycyrrhizin low producing strain	1.972
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.435
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.450

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.383
SRR2868004	Drought Stress (root)	10.300
SRR2967015	Control (root)	7.577

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.636
SRR9715740	Leaf	0.404
SRR9715741	Leaf	0.171
SRR9715739	Root	0.225
SRR9715742	Root	1.304
SRR9715743	Root	0.897

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.950
SRR8749028	MeJA induced 9h	43.306
SRR8749029	MeJA induced 9h	21.987
SRR8749030	Uninduced	39.905
SRR8749031	Uninduced	23.628
SRR8749032	Uninduced	12.010

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.429
SRR8400027	Control - Root	6.916