Gene detail information of Glyur002378s00036060 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G42630.1 | 6.00E-119 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | KHN43732.1 | 0 | Pentatricopeptide repeat-containing protein [Glycine soja] |
| Swissprot | tr|Q9M2A1|PP263_ARATH | 1.00E-151 | Pentatricopeptide repeat-containing protein At3g42630 |
| trEMBL | tr|I1JKX7|I1JKX7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G04350.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02378 | 36862 | 38895 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002378s00036060.1 | PF01535.15 | PPR | 154 | 172 | 0.63 |
| Glyur002378s00036060.1 | PF01535.15 | PPR | 185 | 214 | 0.013 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.193 |
| SRR1783600 | control | 1.030 |
| SRR1783602 | moderate drought stress | 1.248 |
| SRR1811619 | moderate drought stress | 1.176 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.795 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.870 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.985 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.957 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.866 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.144 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.583 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.702 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.737 |
| SRR2868004 | Drought Stress (root) | 3.372 |
| SRR2967015 | Control (root) | 2.857 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.973 |
| SRR9715740 | Leaf | 3.290 |
| SRR9715741 | Leaf | 1.281 |
| SRR9715739 | Root | 0.366 |
| SRR9715742 | Root | 1.098 |
| SRR9715743 | Root | 0.794 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.876 |
| SRR8749028 | MeJA induced 9h | 1.199 |
| SRR8749029 | MeJA induced 9h | 0.727 |
| SRR8749030 | Uninduced | 0.903 |
| SRR8749031 | Uninduced | 0.764 |
| SRR8749032 | Uninduced | 0.553 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.704 |
| SRR8400027 | Control - Root | 2.863 |