Gene detail information of Glyur002375s00041476 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_004488666.1 | 9.73E-75 | PREDICTED: chitinase 2-like [Cicer arietinum] |
| Swissprot | tr|Q7M443|CHIT2_TULBA | 1.00E-32 | Chitinase 2 |
| trEMBL | tr|A0A072TLJ8|A0A072TLJ8_MEDTR | 5.00E-72 | Glycoside hydrolase family 18 protein {ECO:0000313|EMBL:KEH17738.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02375 | 40525 | 41367 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002375s00041476.1 | PF00704.23 | Glyco_hydro_18 | 35 | 198 | 6.20E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.520 |
| SRR1783600 | control | 0.480 |
| SRR1783602 | moderate drought stress | 0.181 |
| SRR1811619 | moderate drought stress | 0.208 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.544 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.524 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.356 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.733 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.068 |
| SRR8400027 | Control - Root | 0.086 |