Gene detail information of Glyur002372s00042524 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G08280.1 | 3.00E-16 | Thioredoxin superfamily protein |
| NR | AFK45359.1 | 6.64E-30 | unknown [Lotus japonicus] |
| trEMBL | tr|I3SYL7|I3SYL7_LOTJA | 2.00E-30 | Uncharacterized protein {ECO:0000313|EMBL:AFK45359.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02372 | 3062 | 16867 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002372s00042524.1 | PF05768.9 | DUF836 | 44 | 68 | 3.10E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.635 |
| SRR1783600 | control | 1.675 |
| SRR1783602 | moderate drought stress | 2.152 |
| SRR1811619 | moderate drought stress | 3.159 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.970 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.184 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.740 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.948 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.735 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.125 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.213 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.130 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.640 |
| SRR2868004 | Drought Stress (root) | 5.151 |
| SRR2967015 | Control (root) | 4.961 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.989 |
| SRR9715740 | Leaf | 15.763 |
| SRR9715741 | Leaf | 13.998 |
| SRR9715739 | Root | 1.892 |
| SRR9715742 | Root | 7.368 |
| SRR9715743 | Root | 5.294 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.800 |
| SRR8749028 | MeJA induced 9h | 13.851 |
| SRR8749029 | MeJA induced 9h | 26.809 |
| SRR8749030 | Uninduced | 3.568 |
| SRR8749031 | Uninduced | 2.865 |
| SRR8749032 | Uninduced | 8.899 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.812 |
| SRR8400027 | Control - Root | 9.030 |