Gene detail information of Glyur002365s00040107 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G06000.2 | 1.00E-93 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | KHN17724.1 | 0 | Pentatricopeptide repeat-containing protein [Glycine soja] |
| Swissprot | tr|Q9ZUE9|PP149_ARATH | 2.00E-115 | Pentatricopeptide repeat-containing protein At2g06000 |
| trEMBL | tr|I1MSA3|I1MSA3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G05680.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02365 | 37263 | 41547 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002365s00040107.1 | PF01535.15 | PPR | 148 | 176 | 5.70E-05 |
| Glyur002365s00040107.1 | PF01535.15 | PPR | 218 | 245 | 0.18 |
| Glyur002365s00040107.1 | PF13041.1 | PPR_2 | 252 | 298 | 1.40E-16 |
| Glyur002365s00040107.1 | PF12854.2 | PPR_1 | 318 | 349 | 6.00E-11 |
| Glyur002365s00040107.1 | PF13041.1 | PPR_2 | 372 | 416 | 1.30E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.119 |
| SRR1783600 | control | 1.177 |
| SRR1783602 | moderate drought stress | 1.145 |
| SRR1811619 | moderate drought stress | 1.087 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.903 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.991 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.933 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.097 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.808 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.896 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.611 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.731 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.749 |
| SRR2868004 | Drought Stress (root) | 2.116 |
| SRR2967015 | Control (root) | 1.815 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.534 |
| SRR9715740 | Leaf | 3.916 |
| SRR9715741 | Leaf | 4.498 |
| SRR9715739 | Root | 0.598 |
| SRR9715742 | Root | 1.557 |
| SRR9715743 | Root | 1.547 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.165 |
| SRR8749028 | MeJA induced 9h | 0.993 |
| SRR8749029 | MeJA induced 9h | 1.218 |
| SRR8749030 | Uninduced | 0.919 |
| SRR8749031 | Uninduced | 0.620 |
| SRR8749032 | Uninduced | 0.434 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.307 |
| SRR8400027 | Control - Root | 2.881 |