Gene detail

Gene detail information of Glyur002365s00040106

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G13700.1	0	polyamine oxidase 1
NR	XP_011047362.1	0	PREDICTED: polyamine oxidase 1-like [Populus euphratica]
COG	YP_006874256.1	3.00E-45	amine oxidase [Emticicia oligotrophica DSM 17448]
Swissprot	tr\|Q9FNA2\|PAO1_ARATH	0	Polyamine oxidase 1
trEMBL	tr\|B9GFC0\|B9GFC0_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:EEE84737.1}

Sequence

Transcript Sequence

>Glyur002365s00040106.1
CACACTGACACACGCAGTTTTTTCCAATCCAATTTCCCTTCTCTTCTCTCTTTCTTTCATTTCATGGCTTCCCACTCTCGCTCCTCCGTCATCATCGTCGGTGCCGGCATCTCCGGTATCTCCGCGGCGAAGGTGCTAGCTAAGAACGGCGTGGAGGACTTCATCATCCTGGAGGCCTCAGACCGAATCGGCGGCAGGATCCGAAAGGAGAACTTCGGCGGCGTGTCCGTCGAGCTAGGTGCCGGTTGGATCGTCGGAGTNGGCGGCAGAGAGTCCAATCCAGTTTGGGAACTCGCCGCCGAATCCGGCCTCCGAACCTGCTTCTCCGACTACACCAATGCGAGATACAACATCTACGATCGCAGCGGGAAGATATTTCCGAGTGGNATCGCTGCCGACTCTTACAAAAAAGCCGTCGACTCGGCGATTCAAAACTTGAGGAACCAGGAAGCTGATGATCGCGGTGGCGATAGCAATAGCTCTGAGATAACCGAATCACCTTCGACGCCAATGGAGCTGGCTATTGATTTCATCCTCCATGATTTTGAAATGGCAGAGGTGGTACCAATATCAACCTTTACTGATTTGGGCGAGAGGGAGTTTTTGGTTGCGGATGAAAGAGGATATGATTGTTTGCTATACAAAATGGCTGAAGATTTTCTCTTTACAGAAGAGGGTATAATCTTGGACACTCGTCTCAAACTTAACCAGGTCGTCCGAGAATTACAGCACTCGAGAAGTGGCGTTACGATGAAAACAGAGGATGGTTGCGTTTACGAAGCTAATTACGTGNTTCTGTCCGTTAGCATTGGCGTTCTCCAGAGCGACCTAGTTGCCTTCAATCCACCCTTGCCCAGATGGAAATTGGAAGCCATAGAGAAATGTGATGTAATGGTGTACACCAAAATCTTTCTGAAGTTTCCATACAAGTTCTGGCNAAGTGGACCTGACAAGGAATTCTTCCTATATGCTCACGATCGGAGAGGCTACTACACATTTTGGCAGCACATGGAGATTGCATACCCTGGCTCCAATATCTTGGTTGTGACATTGACAAATGGGGAATCAAAACGTGTGGAAGCTCAATGTGATAAAGACACTTTGAGAGAGGCTATGGGGGTGCTCAGGGATATGTTTGGACCAAACATACCTGATGCCATTGATATACTTGTTCCAAGATGGTGGAATAACAGGTTCCAACGTGGCAGCTACAGCAACTATCCCATTATCTCTAATGTCCAACTAGTTCGGGATATTAAGGCTCCAGTAGGTCGCATTTTCTTTACTGGAGAGCACACGAGTGAAAGATTTAGTGGCTATGTACATGGTGCATACCTCGCAGGTATTGACTCCAGCAAAGCGTTGCTAGAAGAAATGAGGAAGGAGAAGGAAAGAAATAGTGAGAATCAAACTCTAGTATTAGAGCCCTTGCTAGCATTGACAGAGTCCTTGACAATGTCCCAGTCAGACACGGTCCCAAATCTTCACAAATGCGATATTCCTACAAAATTATATCTGCATGGCAAGCTTGGCATGGCAGAGGCCATATTATGACTATATGGACCTGCAGAGAAACCCTATGTGGAGGATGATGAAATTAAGAAGCATGATTAATGAGAATCATCATGGCCAGGTTAGTCATGATTTAAAGTTAAGTTAAAGTCCCTGGTGCCACTGGTTATGTAGATTAACAGAATACATATTATNAGTCTGATTGTGAGGTGAAGACAGGCAGGAAACATTGCGAGGATCTTCTCAGTTTAGTCCAAAATCACTGCTAATGGAGCTTACTAGATTATGATTATTTTTTTTAAGGGAAATAATTGGTTTAGGGATATTTATGTAGCTTTGTTCATTATAGCAAAGAAGAGATTATGTTGATTCTATCATTGATATCATTTAAAGCAAATGAACCACGTTGATGAAGCCCCACAGTCATTTACCTGTCAAATATACCGGACTGAGTCAATTGAGTAAAGAGTCAAGTGGTTACTGTTGTTAACTGACACTTTGGCTACTGTAAATAGTTGTTTGATACAGCTTTCAGTTTTATTAGTTAGCCTAGTAGATTTAGCTAATACC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02365	22758	34809	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13366	MPAO, PAO1	EC:1.5.3.14 1.5.3.16 1.5.3.-	Arginine and proline metabolism	map00330
			beta-Alanine metabolism	map00410

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002365s00040106.1	PF01593.19	Amino_oxidase	16	113	1.80E-16
Glyur002365s00040106.1	PF01593.19	Amino_oxidase	208	434	5.10E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.292
SRR1783600	control	0.300
SRR1783602	moderate drought stress	1.694
SRR1811619	moderate drought stress	1.523

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.539
DRR006520	Root Summer glycyrrhizin high producing strain	6.441
DRR006521	Root Winter glycyrrhizin high producing strain	5.707
DRR006522	Root Winter glycyrrhizin high producing strain	5.576
DRR006523	Root Summer glycyrrhizin low producing strain	2.314
DRR006524	Root Summer glycyrrhizin low producing strain	2.252
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.865
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.961

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.815
SRR2868004	Drought Stress (root)	2.438
SRR2967015	Control (root)	3.528

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.402
SRR9715740	Leaf	0.975
SRR9715741	Leaf	2.216
SRR9715739	Root	0.440
SRR9715742	Root	1.260
SRR9715743	Root	1.202

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.900
SRR8749028	MeJA induced 9h	16.230
SRR8749029	MeJA induced 9h	14.920
SRR8749030	Uninduced	29.267
SRR8749031	Uninduced	41.753
SRR8749032	Uninduced	29.356

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.373
SRR8400027	Control - Root	1.702