Gene detail

Gene detail information of Glyur002360s00043668.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G49950.3	1.00E-75	telomere repeat binding factor 1
NR	AHB59609.1	4.01E-147	putative MYB-related protein 23 [Arachis hypogaea]
Swissprot	tr\|Q8VWK4\|TRB1_ARATH	8.00E-105	Telomere repeat-binding factor 1
trEMBL	tr\|V5T6Q3\|V5T6Q3_ARAHY	1.00E-147	Putative MYB-related protein 23 {ECO:0000313\|EMBL:AHB59609.1}

Sequence

Transcript Sequence

>Glyur002360s00043668.1
CTTTCTAATGCCTTATCACTCTGCAAAACTTGTGATTATATATTTANAGGTGAATTCAATATTAGTATAATGTACTTTTGCTTGCAGCTGAGAGAGAATTTATGTGCTACTCCCAATGGGTGCTCCTAAGCAGAAATGGACAGCAGAAGAGGAAGCGGCTCTTAAAGCTGGAGTTGTCAAGCATGGGGTTGGTAAATGGCGTACAATACTCAAGGATCCAGAGTTTAGTGGTGTCTTATATCTGCGGTCAAATGTGGATCTCAAGGATAAATGGAGAAATCTGAGCGTGATGGCAAATGGATGGAGCTCCAGGGATAAGTCTAGGTTAGCAGTCAAAAGGGTGCATCAGGCACCAAAACAGGATGACAACTCTATGGCTGTCGTTCCTGTTGCTCCAAGTGATGAAGAAATTGTTGACGTTAAGCCTCTTCAAATCTCAAGAGATATGGTGCAGATTGGTCCGAAAAGGTCTATCGTAAGATTGGATAACCTTATAATGGAAGCAATATCTAGCTTGAAGGAGCACAGTGGTTCTAATAAGACAACTATTGCAGCTTTCATAGAGGACCAATACTGGGCACCACCAGACTTCAAAAAGTTTTTGTCAGCAAAATTNAAGTTTTTGACAGCCAGTGGAAAACTNATCAAGGTANAACGCAGGTATAGGATTGCACATACCGCAGCATATTCAGACAGAAGAAGACACTCGTCCATGTTATTATTGGATGGCAGGCAGAAAGCTTCTATGAAAGTTGACAAGGATGAGACCAACATCCTTACGAAGTCTCAGATAGATTTAGAATTAGCAAAGTTAAGATCCATGACTGCACAAGAGGCAGCNGTAGTTGCTGCTCGAGCAGTTGCTGATGCGGAAGCNGCCATAGCCGAAGCTGAAGAGGCAGCGAAGGAGGCAGAGGCAGCAGAAGCTGACGCGGAGGCAGCACAAGCTTTTGCGGAAGCTGCAACGAAAACACTGAAAGGGAAAAACACCCCAAAGATGATGATCCATGCTTGATGGAAGTTTGAAGAATTGGACATGAGGAGTGATGATCCAATGGTGTTGACCGTGACAGACAGCCAGATCATATTTATCATTTGCTGGCATTGTCTATTATAGATCTAGAAATATCCTTCTTGTAGATAGAAACATTGTTTGAATTTTTCTTGTGATTTCTTGAGAGCTGTTGTTCCCATATTTATTGTATATTAGTGCTCTGCCATTGTACCACCATTTGTAGAATGTAGATGTCTAGATGAATGGGAATCTGTTCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02360	20118	24162	-

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006334 nucleosome assembly

cellular_component

GO:0000786 nucleosome

GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002360s00043668.1	PF00249.26	Myb_DNA-binding	5	56	8.60E-09
Glyur002360s00043668.1	PF00538.14	Linker_histone	125	180	6.30E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.404
SRR1783600	control	6.381
SRR1783602	moderate drought stress	5.918
SRR1811619	moderate drought stress	6.219

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.218
DRR006520	Root Summer glycyrrhizin high producing strain	11.010
DRR006521	Root Winter glycyrrhizin high producing strain	17.385
DRR006522	Root Winter glycyrrhizin high producing strain	16.111
DRR006523	Root Summer glycyrrhizin low producing strain	11.805
DRR006524	Root Summer glycyrrhizin low producing strain	13.364
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.274
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.742

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.140
SRR2868004	Drought Stress (root)	22.282
SRR2967015	Control (root)	22.242

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.869
SRR9715740	Leaf	14.335
SRR9715741	Leaf	15.691
SRR9715739	Root	6.333
SRR9715742	Root	9.162
SRR9715743	Root	10.878

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.408
SRR8749028	MeJA induced 9h	5.387
SRR8749029	MeJA induced 9h	4.906
SRR8749030	Uninduced	6.174
SRR8749031	Uninduced	4.365
SRR8749032	Uninduced	5.980

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.178
SRR8400027	Control - Root	16.763