Gene detail

Gene detail information of Glyur002359s00036944

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G30810.2	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein
NR	XP_004488208.1	PREDICTED: probable lysine-specific demethylase JMJ14-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q8GUI6\|JMJ14_ARATH	Probable lysine-specific demethylase JMJ14
trEMBL	tr\|K7LCJ5\|K7LCJ5_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G09973.1}

Sequence

Transcript Sequence

>Glyur002359s00036944.1
GATAATCCTTTTAGGCACAAGCCAAAAAATAAGAATGCACCTGAGTCTTCTGACAGTCTGAGAAGTAGAAAGGTATCAGCTAGGTGGGATCCGGCTGAACCATGCCGGCCTACAGTTGATGAAGCGCCTGTGTTTTATCCGACTATTGAGGAGTTTGAAGACACCCTCAGTTACATAGCAAAGATACGCCCCCTAGCTGAACCTCATGGCATATGTAGGATTGTCCCTCCGGCTTGTTGGGTTCCACCTTGCCCTCTAAAAGAGAAAGATGTATGGGAAAATACTGAATTTCCCACCCGTATTCAGACAATTGATTTGCTTCAAAATAGGGAACCTATGAAGAAAAAAAGTAGGGGAAGGAAACGAAAACGTAGAAAGAACTCCAAAACAGGAACATGTCGGAGACTTGCCAGTTCAGCTTCTGAAGCTAATAATGCTTCTGAACCTGATGAGAAATTTGGATTCCAATCAGGGTCGGACTTCACGCTTAAAGACTTCCAGCAATATGCTAGTTATTTTAAGGAATGCTACTTTGGGTTGAAAGATGCCAATGGAGATGGAAAATTCAGTGATAGTAACCATAAGAAGAGATGGGAGCCCTCTGAGGAGGAAATTGAAGGTGAATACTGGCGAATAATTGAGCAACCCACCGATGAAGTTGAGGTGTATTATGGAGCTGACTTGGAAAGTGGAGCACTTGGAAGTGGTTTTCCTAAGGCATCATCCTTAACTAAGAGTGATTCGGATCNGTATGCCCTGTCTGGCTGGAATCTAAATAACTTCCCACGACTGCCAGGTTCTGTACTAAGTTTTGAAGGAAGCGACATCTCAGGAGTACTAGTGCCATGGCTGTATGTTGGCATGTGTTTTTCATCATTTTGCTGGCATGTTGAGGATCATCACCTCTATTCACTTAATTATCTGCACTGGGGTGACTCAAAAGTATGGTATGGAGTACCAGGAAGCCATGCTTCTGCTTTTGAAAATGCAATGAGGAAGCACTTGCCTGATTTATTTGAGGAACAGCCAAATCTACTCAATGAACTGGTTACTCAGTTATCTCCTTCAATTCTTAAATCTGAGGGAGTGNCTGTATATCGCACTGTTCAGCATTCTGGGGAATTTGTTATTACCTTTCCAAGGGCATACCACTCTGGCTTCAATTGTGGCTTCAACTGTGCTGAAGCAGTGAATGTGGCTCCTGTTGATTGGTTAATGCATGGCCAGAATGCTGTTGAGCTTTACAGTTTACAACGCCGTAAGACATCATTGTCACATGACAAGCTGTTATTTGGATCAGCACTGGAAGCTTTACGAGCCCTTGCAGAGCTAACTCTTCATGGGAAGGAAACTCCAAAAAATTTGAAATGGAGAAGTGCCTGNGGGAAAGATGGAGTTCTTACTAAGGCTTTTAAGACAAGGATAAAGATGGAAGAAGAGAGGCTAGACTGTCTTCCAAGTCATTTTAAGTTGCTGAAGATGGACAACGACTTTGACGTGTCCACAGAAAGAGAATGCTTCTCTTGCTTCTATGACTTGCACCTATCTGCTGTAGGTTGTGAGTGCTCCCCTGATAGATATTCTTGTCTCAAGCATGCTAATTTGTTCTGCTCATGCGAGATGGACAAAAGATTTGTTATGCTTCGTTATAATATAAATGAGCTAAACAANTTGCTTCAAGCACTAGAAGGAGAATCACTTGCCATTGAGGCATGGGCAAATAAAAACTTTAGAATGGTTTCTGCTGATGCCAATGAGGTTTGCATAGATAAACAAGATATGGAGAGAGACAAGGGTCTTGAAGAAGGGGAAAGCTCAGCTGGTTGTGGAAGTTCCAAGGATAGGTCAAATTTAAATGCATCTACTAGTCCTAATAGCCATGTCACTAGAGAGATGATGCAGTCTGAATCTCACCTTGTAACTTTTAGTGCATCAAATGGAAGTATAGTCATATACAAAGATAAGGTGGATCAGGCAGGTTCTCTGGATTTGAATCTTGATGATATATCTGGTGAAAATAAAAATTATAANGGTGTTTCAGTAGAGGAAAAAGTATGCTGTTCAGAGACCAGAAAGGAACAAGAAAACATGGAACTTGTTGGTGTTGGTGACCAATCACACTCATTTTCTGTTTTGAAGACAGAATTTTCATCATGTTCAAGGGATGTTCACAATTCTTGTATATCTGATGGTAGAAAATATGAGGTGGATCAGCTAATGGATTTGGATTCTAGAAAGAAACCTGACAGTGTATTTAAAAAAGAAGTCATAGACACCCCGAACACAAGTATAGCTTTGACAGACGAAAGCTGCCTACTGCANATGTTTGGTACTTCTGTCAAGCTTATAAGTTTGGGGTCTGTTGTTCCTGGAAAGCTGTGGTGCAGTAAGCATGCAATGTATCCAAAAGGATTCAAGAGCCGAGTTTATTTCTTTAGTATTCTCAATCCATCAAGAATCTGTAGCTATATTTCTGCAGTCATTGATGCTGGATTTCTTGGACCTCTTTTCAAGGTTACGGTGGAAGAACACCCAAGTGAGGCTTTCATGGACACCTCAGCAGATAAGTGCTGGGAATCAGTTCTAAAGAGACTCCATTATGAAATCATGCGGCGAAGGAGTCTAGGTGAACTTGAACTNCCTTCCCTAGAGCTTCTGAAAAACATCAACGGTCTTAGAATGTTCGGCTTCCTTTCACCATCTGTTATTCAGGCCATCGAAGCTCAAGATCCAAGTCATCAGTGTGCAGAGTACTGGAACCACAAGGTTGTCCCTACATCTCCAGGCAGTGTCATTGATAACTATAAGGTCCTATGGGGTTCAAGTAGCCCTTCAGATAACNTCGACACCAAAGTTTTCGGTATCGATTTGATTGAGCAGGCAAAGGATCACCCAAGAGGAAGTTGTCATCATTCCCTTGAAGAGATGAAACCAATACTAGAAAAGGCAAGTCCTGAGGAGTTAAGCACAANGCACAAGTTACTCAGCTCTGAATCTGATGCACAGTGCTCCCAGTGGAGAATGGCATTGATATCAGTGATGGATGAGATCCAGAANGCTTGTAGATAGAACAAGATCAAGATCTCAATTCTTTTTTCTGACTTTGGATAGTTATATTTCAATTTAGTCATTAGTTAGGTCCATTCTTTCAGAGATCAACTGAACTGAAGAAGTTGCTGGGTGAAGCTGAGATAAAAATTTTGCTACTTGCCCACACAATCAAATTGACCTAATTACAGATGNATTTGCCATTGACCCATTTCAACTTTTGCTTTTGCTTTTGCATTTGCCCTTTTTTAAGGTCAAGCCTT

Protein Sequence

>Glyur002359s00036944.1
DNPFRHKPKNKNAPESSDSLRSRKVSARWDPAEPCRPTVDEAPVFYPTIEEFEDTLSYIAKIRPLAEPHGICRIVPPACWVPPCPLKEKDVWENTEFPTRIQTIDLLQNREPMKKKSRGRKRKRRKNSKTGTCRRLASSASEANNASEPDEKFGFQSGSDFTLKDFQQYASYFKECYFGLKDANGDGKFSDSNHKKRWEPSEEEIEGEYWRIIEQPTDEVEVYYGADLESGALGSGFPKASSLTKSDSDXYALSGWNLNNFPRLPGSVLSFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDSKVWYGVPGSHASAFENAMRKHLPDLFEEQPNLLNELVTQLSPSILKSEGVXVYRTVQHSGEFVITFPRAYHSGFNCGFNCAEAVNVAPVDWLMHGQNAVELYSLQRRKTSLSHDKLLFGSALEALRALAELTLHGKETPKNLKWRSAXGKDGVLTKAFKTRIKMEEERLDCLPSHFKLLKMDNDFDVSTERECFSCFYDLHLSAVGCECSPDRYSCLKHANLFCSCEMDKRFVMLRYNINELNXLLQALEGESLAIEAWANKNFRMVSADANEVCIDKQDMERDKGLEEGESSAGCGSSKDRSNLNASTSPNSHVTREMMQSESHLVTFSASNGSIVIYKDKVDQAGSLDLNLDDISGENKNYXGVSVEEKVCCSETRKEQENMELVGVGDQSHSFSVLKTEFSSCSRDVHNSCISDGRKYEVDQLMDLDSRKKPDSVFKKEVIDTPNTSIALTDESCLLXMFGTSVKLISLGSVVPGKLWCSKHAMYPKGFKSRVYFFSILNPSRICSYISAVIDAGFLGPLFKVTVEEHPSEAFMDTSADKCWESVLKRLHYEIMRRRSLGELELPSLELLKNINGLRMFGFLSPSVIQAIEAQDPSHQCAEYWNHKVVPTSPGSVIDNYKVLWGSSSPSDNXDTKVFGIDLIEQAKDHPRGSCHHSLEEMKPILEKASPEELSTXHKLLSSESDAQCSQWRMALISVMDEIQXACR

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02359	17238	24187	-

Gene family

Gene family	subfamily
Transcription Factors Family	Jumonji

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002359s00036944.1	PF02375.12	JmjN	43	76	7.10E-15
Glyur002359s00036944.1	PF02373.17	JmjC	283	399	5.40E-46
Glyur002359s00036944.1	PF02928.11	zf-C5HC2	506	558	1.00E-14
Glyur002359s00036944.1	PF05964.9	FYRN	779	829	2.90E-11
Glyur002359s00036944.1	PF05965.9	FYRC	834	920	3.60E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.441
SRR1783600	control	1.452
SRR1783602	moderate drought stress	1.838
SRR1811619	moderate drought stress	1.780

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.906
DRR006520	Root Summer glycyrrhizin high producing strain	3.800
DRR006521	Root Winter glycyrrhizin high producing strain	7.100
DRR006522	Root Winter glycyrrhizin high producing strain	6.794
DRR006523	Root Summer glycyrrhizin low producing strain	8.437
DRR006524	Root Summer glycyrrhizin low producing strain	8.634
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.512
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.535

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.828
SRR2868004	Drought Stress (root)	14.736
SRR2967015	Control (root)	12.938

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.814
SRR9715740	Leaf	11.142
SRR9715741	Leaf	14.337
SRR9715739	Root	0.879
SRR9715742	Root	5.960
SRR9715743	Root	6.216

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.603
SRR8749028	MeJA induced 9h	31.580
SRR8749029	MeJA induced 9h	20.596
SRR8749030	Uninduced	20.805
SRR8749031	Uninduced	42.684
SRR8749032	Uninduced	21.321

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.008
SRR8400027	Control - Root	8.506