Gene detail

Gene detail information of Glyur002357s00041555

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G08150.1	7.00E-120	KNOTTED-like from Arabidopsis thaliana
NR	NP_001253999.1	0	homeobox protein knotted-1-like 2-like [Glycine max]
Swissprot	tr\|O04135\|KNAP2_MALDO	2.00E-172	Homeobox protein knotted-1-like 2
trEMBL	tr\|I1M8Y1\|I1M8Y1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G10430.1}

Sequence

Transcript Sequence

>Glyur002357s00041555.1
CTACTGTTCTGTTGTCTCTGCAGCAGGGACTTGTGAGTGTGGAGGAGAGAAAAAAAAAATAAAAAAAAAACAAATTAAGAAAAGAAACAGAAAGAGTGAATCCCTTTGCAGTCTCTACAACACTACAGAAGTTGCAGAGGATCCACACACATCTCTTAAATAAAGAACATTAACCACTTTGATAATCTCATGACTCATGGTTACTGGTTACNGCACCCTACACTTGCCTTTTATGATTTTTAAATATTTTTTTTCCCTTCTCTCTCACAACTCACAAAGGAAAGAAAGTCTCGTCAACCACCCACCCCAACACAAAGCCATTGCCGGTTTCGACTGCGCCACTCGCTAGCTCTTTTTTTTTCTCTTTCCTTCTCTCTTATATCTTCCAAACCTCTCANTCTCCGTACAACACATCATGTGAGTGAGAGTATCGCTGGTTTTCTACCTTCTCCACCCTGTCAATGCCGGTGCAATCATTCTTTACTCACTTGAGAAATTGAGATAGCTATAACTTTTTCTGCCTCTTTCTCCAACTTGAACCCCTTCAACCCCAACACACACAAAATCAAAAATCACACTTTGTGGTGACGATTGTGTGGTCCTTCACAACACTCATTACCAATCTTCATTTTTTAGGGTTTCAATTAAGTTGTTGACCGTTCCATATGAGAAGTAGGGTTTTAATCATATATNTAGTTCCAAGCTAGCTCTTGGTTTATCATAAGCTGAGTGTGAAAGAGAGTTATTAAATTTTGTTTTTCTTAAATTTGAATTTGATGGAGGAATACAATAATAATCACCTAAGCGAAAACACAGGTCCAAGTCCAAGTCCAAGTCCAAGTCCAAGGCCAAATTTCTTGTACTCTTCTTCAGCTAGTGGAAACCACCAATCTCATCATCAACACCACCATCACCATCACCATCATCACCATGATCATGATCATGATCATCATCACCGTCAGCAGCATCAGCTTCCAATCAACACCTTTCATCTTCAATCGGGTGGATCAGATCACTGTTTTCAATCGGACCAAGTTCCACACCCTGCTGTGAAAACCGAAGCCAGCACNTCACAGCTTCTTCACACCCCGATTTTCCACTACCCTTTAATGAGAGGGAATCTTCAACACACCACGATGCAGCATCAAAGCCAGCAACAAGGAGGAGGAGGGAGTCCTCCAAGCTCAAGTGAAGTTGAAGCCATAAAAGCCAAAATCATTGCTCATCCTCAGTACTCCACTCTTCTAGAAGCTTACATGGATTGCCAAAAGATAGGAGCTCCACCGGAAGTGGTGGCGCGTCTAGTTGCGGCGAGGCAAGAGTTTGAGGCACGGCAACGATCTTCAANTAGCTCCTCCAGGGAAACTTCCAAAGACCCAGAACTAGACCAATTCATGGAAGCTTACTATGACATGCTTGTGAAGTACCGAGAGGAATTAACAAGGCCTATACAAGAGGCTATGGATTTCATGCGCAGGATTGAGTCTCAGCTAAATATGCTTTGCAATGGACCCGTGCGGATCTTATCTGATGATAAATGNGAAGGCGTTGGTTCATCAGAAGAGGATCAAGACAACAGTGGTGGAGAAACAGAATTGCCCGAGATTGATCCGCGAGCAGAAGACCGTGAACTCAAAAACCACTTGCTGAGGAAATATAGTGGTTACTTGAGTAGCCTCAAGCAAGAACTTTCCAAGAAGAAAAAGAAAGGAAAACTTCCTAAAGAGGCTAGGCAAAAGCTACTTAACTGGTGGGAATTACATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCATTGGCAGAATCAACTGGTTTGGATCAGAAGCAAATAAACAACTGGTTCATAAATCAAAGGAAGAGACACTGGAAACCATCNGAAGACATGCAGTTTATGGTTATGGATGGCCTGCATCCGCAAAACGCGACTCTTTACATGGATGGCCACTACATGGCTGATGGTCCTTACCGTCTAGGACCATGATGTTGATCTCCTTATTTATATATATTTAGTTTTATGTGCACGGTACAAGCTTTTCATTACCCCCCAAAAAAAAAACTGTTNAAACTGGATAACAGTCATTAGTTTCAAAATATCACGAGCATATGACCGTGAACNTTGGTTGTGCTTGTGCAGTGTGAGTGTTTGAGTTTGCCATAGTGATATTGTTTTTGTTCAATCAGTGGATGTTGCTTATATTTTCAGTAAGTAGTACACCCTGTAGTGATAAAAAAATTCATTAAGATGTTTCATTGTTGGATTTTAAATATCATGCTTAAGGATTGGAGTAGGTGCCTTNTGATTGTTACATCGAACTGAACAAGGGTGTAACTTTTGTGGTGTGATCATTGGTGTATGGAGAAGAAGAAATTTGCAATTTGGAGCTTCTGTACGTTACCATGTGAAAGTCTGTAAGGAGATACTGGCTGTTGAGCTTTTAATTAAGTGTATATATGTCAAGAACATATTTTCATCATGAAACTTGTGATGGTTCAATGTTGCAATGCCATTTNGGGGTCATGCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02357	21295	30148	-

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002357s00041555.1	PF03790.8	KNOX1	141	184	8.60E-23
Glyur002357s00041555.1	PF03791.8	KNOX2	194	244	2.40E-25
Glyur002357s00041555.1	PF03789.8	ELK	285	306	1.10E-09
Glyur002357s00041555.1	PF05920.6	Homeobox_KN	325	364	5.40E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	136.706
SRR1783600	control	137.210
SRR1783602	moderate drought stress	163.631
SRR1811619	moderate drought stress	161.270

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	202.950
DRR006520	Root Summer glycyrrhizin high producing strain	200.290
DRR006521	Root Winter glycyrrhizin high producing strain	16.829
DRR006522	Root Winter glycyrrhizin high producing strain	16.480
DRR006523	Root Summer glycyrrhizin low producing strain	307.419
DRR006524	Root Summer glycyrrhizin low producing strain	306.931
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.220
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.252

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.887
SRR2868004	Drought Stress (root)	24.149
SRR2967015	Control (root)	28.154

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.047
SRR9715740	Leaf	0.125
SRR9715741	Leaf	0.000
SRR9715739	Root	35.429
SRR9715742	Root	88.591
SRR9715743	Root	76.877

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	28.566
SRR8749028	MeJA induced 9h	10.355
SRR8749029	MeJA induced 9h	21.201
SRR8749030	Uninduced	11.194
SRR8749031	Uninduced	7.506
SRR8749032	Uninduced	20.226

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	101.287
SRR8400027	Control - Root	153.457