Gene detail information of Glyur002356s00040298 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G08890.2 | 6.00E-81 | Protein of unknown function, DUF538 |
| NR | NP_001237444.1 | 6.59E-113 | uncharacterized protein LOC100500143 [Glycine max] |
| Swissprot | tr|Q9M015|Y5161_ARATH | 6.00E-98 | Uncharacterized protein At5g01610 |
| trEMBL | tr|C6T0N6|C6T0N6_SOYBN | 2.00E-113 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G31311.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02356 | 23649 | 27807 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002356s00040298.1 | PF04398.7 | DUF538 | 55 | 159 | 5.00E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 42.737 |
| SRR1783600 | control | 42.761 |
| SRR1783602 | moderate drought stress | 46.344 |
| SRR1811619 | moderate drought stress | 46.093 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 77.956 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 77.100 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 91.229 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 87.401 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 94.038 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 95.082 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 31.229 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 31.367 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 134.486 |
| SRR2868004 | Drought Stress (root) | 123.857 |
| SRR2967015 | Control (root) | 143.913 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 72.436 |
| SRR9715740 | Leaf | 78.993 |
| SRR9715741 | Leaf | 63.200 |
| SRR9715739 | Root | 48.435 |
| SRR9715742 | Root | 43.463 |
| SRR9715743 | Root | 52.327 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 166.579 |
| SRR8749028 | MeJA induced 9h | 130.806 |
| SRR8749029 | MeJA induced 9h | 161.355 |
| SRR8749030 | Uninduced | 164.784 |
| SRR8749031 | Uninduced | 233.979 |
| SRR8749032 | Uninduced | 218.637 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 157.206 |
| SRR8400027 | Control - Root | 161.703 |