Gene detail

Gene detail information of Glyur002356s00040297.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G01600.1	1.00E-69	ferretin 1
NR	ADD10132.1	6.18E-138	ferritin 2 [Lupinus luteus]
COG	YP_003483250.1	2.00E-23	Ferroxidase [Aciduliprofundum boonei T469]
Swissprot	tr\|O65100\|FRI3_VIGUN	2.00E-134	Ferritin-3, chloroplastic (Precursor)
trEMBL	tr\|D5G1R3\|D5G1R3_LUPLU	2.00E-138	Ferritin {ECO:0000256\|RuleBase:RU361145}

Sequence

Transcript Sequence

>Glyur002356s00040297.1
CCGGATATTTCTACAGATTCCACGTTCACACTGGATAGGCCACGAGCCCGCCACACGCCCGTACTCGCGAATGAATCGCAGCCCTCCAAGTGTAAAACCATCCAACGGTCCAGATTAAAAGCCCTTCCACCTCGAATTCCCCAAATACCCCTCGCCACCCCTACTTATATCGCCTTTGTCCCTCTTCTTCATTTCACCCCTCAGAGCCGCCATTGATTTTCTCTCTTCTCTTCATTTCTCGAATACCCATTTAGTGGTTCTTCCCAAATGGCTCTTTCTTCTTCCAAAGTTTCTGTCTTTTCTCACTCACCCATTGTTGGTGATGTTGTTCCAAAGAAGCTATCTCCTTTTTCTTCTTCTCTGAGTTTTGTTCTCTCTTCTTCTTCTTCTTCTTCCTCTTCCTTGAGCCTTTCCAAGGTAGGAGGAAGAAGAAACTTCATGGTGTGTTCTGCTGCACCAGCGCCACTCACTGGGGTGATATTTGAACCCTTTGAAGAGGTCAAGAAGGAGCTTCTTGCTGTTCCNATGGCACCTAATGTTTCCTTGGCTCGTCAGAACTATGCTGATGAGCCTGAAGCTGCAATCAACGAACAGATTAATGTGGAGTACAACGTTTCCTATGTGTACCACTCCTTGTTTGCATACTTCGACAGGGACAACGTAGCTCTCAAGGGCTTTGCCAAGTTCTTTAAGGAATCAANTGAAGAAGAAAGAGAGCATGCTGAAAAGCTTATGAAATATCAGAACATTCGTGGTGGAAGGGTGGTGTTGTACCCTATCGTGAGTCCCCCCTCAGAATTTGACCATGTGGAAAAGGGGGATGCATTGCACGCCATGGAACTAGCTTTGTCTTTGGAGAAGTTAGTAAATGAGAAACTTCTGAATCTTCACAGTGTGGCAGAACGTAACAATGATCCTCAACTGGCAAACTTCATTGAGAGCGAGTATTTGGACGAGCAGGTTGAATCAATCAAGAAGATAGCAGAGTATGTGACACAACTGAGATTAGTTGGAAAGGGTCACGGTGTGTGGCACTTTGATCAAAGACTTCTTGATTAGAATGATCATGTTTGATCTTTGAACCAGCCTGCTTGCTATCTTTCTTACATTTGGTCCATTATGAAGTTTCTGTGTTGTTTCAAATTCGTAGAAATAGTGAAATAAGTGTATCTCCTAGGTAATGAGATGCAGAAAGCAGTGTGTATTGTTGTAGTTGCTAGTATCATGTGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02356	9067	12771	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00522	FTH1	EC:1.16.3.2	Mineral absorption	map04978

Gene Ontology

biological_process

GO:0006826 iron ion transport

GO:0006879 cellular iron ion homeostasis

molecular_function
GO:0008199 ferric iron binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002356s00040297.1	PF00210.19	Ferritin	104	247	1.80E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	145.620
SRR1783600	control	144.913
SRR1783602	moderate drought stress	181.517
SRR1811619	moderate drought stress	179.790

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	75.461
DRR006520	Root Summer glycyrrhizin high producing strain	73.798
DRR006521	Root Winter glycyrrhizin high producing strain	300.404
DRR006522	Root Winter glycyrrhizin high producing strain	288.346
DRR006523	Root Summer glycyrrhizin low producing strain	10.795
DRR006524	Root Summer glycyrrhizin low producing strain	11.254
DRR006525	Leaf Summer glycyrrhizin high producing strain	58.827
DRR006526	Leaf Summer glycyrrhizin high producing strain	57.312

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	241.133
SRR2868004	Drought Stress (root)	63.374
SRR2967015	Control (root)	122.053

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	37.494
SRR9715740	Leaf	72.841
SRR9715741	Leaf	37.693
SRR9715739	Root	54.754
SRR9715742	Root	112.766
SRR9715743	Root	95.687

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.744
SRR8749028	MeJA induced 9h	37.954
SRR8749029	MeJA induced 9h	23.118
SRR8749030	Uninduced	15.841
SRR8749031	Uninduced	31.447
SRR8749032	Uninduced	44.438

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	681.642
SRR8400027	Control - Root	831.371