Gene detail information of Glyur002355s00038471 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G44835.1 | 3.00E-71 | YbaK/aminoacyl-tRNA synthetase-associated domain |
| NR | XP_006596191.1 | 2.58E-119 | PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1-like isoform X2 [Glycine max] |
| COG | NP_418930.1 | 9.00E-19 | DNA-binding protein [Caulobacter crescentus CB15] |
| trEMBL | tr|I1MA16|I1MA16_SOYBN | 1.00E-119 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G22940.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02355 | 5122 | 11186 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002355s00038471.1 | PF04073.10 | tRNA_edit | 1 | 100 | 3.40E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.807 |
| SRR1783600 | control | 5.326 |
| SRR1783602 | moderate drought stress | 3.758 |
| SRR1811619 | moderate drought stress | 3.956 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.258 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.760 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.447 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.075 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.695 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.722 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.215 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.279 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.576 |
| SRR2868004 | Drought Stress (root) | 9.311 |
| SRR2967015 | Control (root) | 7.497 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.834 |
| SRR9715740 | Leaf | 8.406 |
| SRR9715741 | Leaf | 6.377 |
| SRR9715739 | Root | 0.358 |
| SRR9715742 | Root | 2.840 |
| SRR9715743 | Root | 4.188 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.381 |
| SRR8749028 | MeJA induced 9h | 7.164 |
| SRR8749029 | MeJA induced 9h | 9.346 |
| SRR8749030 | Uninduced | 7.771 |
| SRR8749031 | Uninduced | 4.678 |
| SRR8749032 | Uninduced | 2.627 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.222 |
| SRR8400027 | Control - Root | 9.457 |