Gene detail information of Glyur002353s00034539 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G14960.1 | 0 | Auxin-responsive GH3 family protein |
| NR | XP_007155870.1 | 0 | hypothetical protein PHAVU_003G238700g [Phaseolus vulgaris] |
| COG | NP_870622.1 | 9.00E-23 | auxin-responsive-like protein [Rhodopirellula baltica SH 1] |
| Swissprot | tr|O82333|GH31_ARATH | 0 | Probable indole-3-acetic acid-amido synthetase GH3.1 |
| trEMBL | tr|V7CCK2|V7CCK2_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW27864.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02353 | 40267 | 42261 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002353s00034539.1 | PF03321.8 | GH3 | 24 | 574 | 2.20E-201 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.087 |
| SRR1811619 | moderate drought stress | 0.108 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.062 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.062 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.678 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.790 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.048 |
| SRR2868004 | Drought Stress (root) | 0.028 |
| SRR2967015 | Control (root) | 0.048 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.058 |
| SRR9715740 | Leaf | 0.048 |
| SRR9715741 | Leaf | 6.889 |
| SRR9715739 | Root | 0.028 |
| SRR9715742 | Root | 1.222 |
| SRR9715743 | Root | 0.886 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 126.662 |
| SRR8749028 | MeJA induced 9h | 1101.368 |
| SRR8749029 | MeJA induced 9h | 186.041 |
| SRR8749030 | Uninduced | 586.615 |
| SRR8749031 | Uninduced | 804.453 |
| SRR8749032 | Uninduced | 160.903 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.197 |
| SRR8400027 | Control - Root | 0.846 |