Gene detail

Gene detail information of Glyur002349s00033866.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G13560.2	5.00E-161	aminoalcoholphosphotransferase 1
NR	KEH25369.1	0	aminoalcoholphosphotransferase [Medicago truncatula]
Swissprot	tr\|O82567\|AAPT1_ARATH	0	Choline/ethanolaminephosphotransferase 1
trEMBL	tr\|A0A072U6L5\|A0A072U6L5_MEDTR	0	Aminoalcoholphosphotransferase {ECO:0000313\|EMBL:KEH25369.1}

Sequence

Transcript Sequence

>Glyur002349s00033866.1
CTAAACCGTACAACAACTACAAAAGAAAAAAAAAGTTCAGCGATCGACAGAAAATTAAGCGCATTTGGGGAATAAAAACATACGTAGTGAATCAAACCATTCATAGGAACAGTAGAACAGCAACACCCTTTTATATCTCTGTCCCATCATCCCATGTGTTTGGGAAAAAGTTCATTGTTCATCACACACTTGNGAATCTCTCCATTTTCCATTCTCTTTCACTCTCACACCCTTTCTCTCAGGTTGTGCTGAGGTATAGCTGGTCCTTGAAGCTACATAGTTCTGGAGAGAAAGAATGGGTTATATCGGGGCTCATGGTGTTGCAGCTCTGCATAGATACAAATATAGTGGTGTAGATCATTCCTACCTGGCCAAATATGTACTGCAGCCTTTTTGGAGTCGCTTTGTTAATTTTTTCCCCCTATGGATGCCATAACTCTGACAGGATTTATGTTCTTACTAGTGTCTGCATCGCTTGGCTATATATACTCACCTCAGTTGGACTCAGCTCCTCCAAGATGGGTTAATTTTGCACATGGCTTACTTCTGTTTCTATACCAGACATTTGATGCTGTTGATGGGAAGCAAGCTAGACGAACAAATTCTTCAAGCCCATTGGGGGAGCTGTTTGATCATGGGTGTGATGCACTTGCTTGTACATTTGAAGCACTTGCTTTTGGGAGCACATCCATGTGTGGAAGAAGTACTTTCTGGTGGTGGTTAATATCTGCAGTTACATTTTATGGTGCAACCTGGGAGCACTTTTTCACCAATACACTTATACTGCCTGTTATAAATGGACCTACAGAGGGTCTTATGCTGATATACTCCTGCCACTTTTTCACAGCTATNGTGGGTTCTGAATGGTGGGCTCAGCAATTTGGAAAGTCTTTGCCTTTTTTGAATTGGTTGCCTTTTATTGCGGATATCCCAACACACAGAGCTATATTGTGTTTGATGATAGCTTTTGGTGTTATACCAACAGTCGCGTGCAATGTTCTTAATGTTTACAAGGTTGTGAAGGCAAGAAATGGAAGCATGCCACTTGCATTGGCAATGCTTTATCCATTTGTTGTACTTGTTGGAGGAGTGCTTGTTTGGGATTATTTGTCACCATCTGACATCATAGGCAGTTATCCACATTTAGTCATTACAGGAACAGGACTTACTTTCGGATATCTTGTGCTTCCTTATGTAGACAATCCAACTCCTTATCCTATGGCTTTTACTGAGGGAAGCTTAATTTTGCAGGGAAGGATGATTTTGGCCCACTTATGTGATGAACCCAAAGGCTTAAAAACTGGAATGTGCATGTCCCTCCTGTATCTCCCATTTGCCATTGCTAATGCGCTTGCATCCAAGCTAAATGATGGGNTTCCTTTAGTAAACGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTACAGCGACACTGTACTTGCATTTCGCGACATCTGTCATTCATGAAATTACAAATGCCCTGGGAATATATTGCTTCAGGATAACAAGGAAGGAAGCTTGAATCTACCCAAGATTTCCTTTAGGCATGCCCTTTTCCAATTCATTACTTGAGTTTTTGGACGCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02349	3299	15087	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00993	EPT1	EC:2.7.8.1	Glycerophospholipid metabolism	map00564
			Glycerophospholipid metabolism	map00564
			Ether lipid metabolism	map00565
			Ether lipid metabolism	map00565
			Phosphonate and phosphinate metabolism	map00440
			Phosphonate and phosphinate metabolism	map00440

Gene Ontology

biological_process
GO:0008654 phospholipid biosynthetic process

cellular_component
GO:0016020 membrane

molecular_function
GO:0016780 phosphotransferase activity, for other substituted phosphate groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002349s00033866.1	PF01066.16	CDP-OH_P_transf	3	100	5.60E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	37.930
SRR1783600	control	38.188
SRR1783602	moderate drought stress	40.355
SRR1811619	moderate drought stress	40.363

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	58.238
DRR006520	Root Summer glycyrrhizin high producing strain	57.364
DRR006521	Root Winter glycyrrhizin high producing strain	60.075
DRR006522	Root Winter glycyrrhizin high producing strain	58.073
DRR006523	Root Summer glycyrrhizin low producing strain	40.005
DRR006524	Root Summer glycyrrhizin low producing strain	39.812
DRR006525	Leaf Summer glycyrrhizin high producing strain	32.150
DRR006526	Leaf Summer glycyrrhizin high producing strain	31.965

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	63.341
SRR2868004	Drought Stress (root)	51.013
SRR2967015	Control (root)	57.940

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.206
SRR9715740	Leaf	27.201
SRR9715741	Leaf	26.761
SRR9715739	Root	23.330
SRR9715742	Root	30.417
SRR9715743	Root	31.034

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	39.430
SRR8749028	MeJA induced 9h	34.098
SRR8749029	MeJA induced 9h	29.330
SRR8749030	Uninduced	14.903
SRR8749031	Uninduced	10.472
SRR8749032	Uninduced	11.109

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	52.426
SRR8400027	Control - Root	52.120