Gene detail information of Glyur002343s00044254 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G24620.1 | 7.00E-21 | EF hand calcium-binding protein family |
| NR | XP_003542750.1 | 5.28E-84 | PREDICTED: probable calcium-binding protein CML29-like [Glycine max] |
| Swissprot | tr|Q5Z676|CML29_ORYSJ | 3.00E-25 | Probable calcium-binding protein CML29 |
| trEMBL | tr|I1LW36|I1LW36_SOYBN | 2.00E-84 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G02550.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02343 | 38515 | 38988 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002343s00044254.1 | PF13499.1 | EF-hand_7 | 20 | 78 | 4.50E-11 |
| Glyur002343s00044254.1 | PF13833.1 | EF-hand_8 | 107 | 149 | 6.30E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.876 |
| SRR1783600 | control | 21.917 |
| SRR1783602 | moderate drought stress | 26.037 |
| SRR1811619 | moderate drought stress | 24.136 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 51.299 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 49.360 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.757 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.804 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 36.738 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 36.334 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 186.088 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 183.435 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.956 |
| SRR2868004 | Drought Stress (root) | 34.930 |
| SRR2967015 | Control (root) | 47.583 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 51.657 |
| SRR9715740 | Leaf | 51.612 |
| SRR9715741 | Leaf | 32.127 |
| SRR9715739 | Root | 7.014 |
| SRR9715742 | Root | 29.837 |
| SRR9715743 | Root | 26.551 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.164 |
| SRR8400027 | Control - Root | 6.871 |