Gene detail information of Glyur002341s00037861


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G15680.12.00E-27Calcium-binding EF-hand family protein
NRXP_007139465.16.80E-88hypothetical protein PHAVU_008G031800g [Phaseolus vulgaris]
COGYP_007118813.11.00E-09putative signal transduction protein with EFhand domain [Oscillatoria nigro-viridis PCC 7112]
Swissprottr|Q9ZQE6|CML1_ARATH2.00E-41Calmodulin-like protein 1
trEMBLtr|V7B0V9|V7B0V9_PHAVU3.00E-88Uncharacterized protein {ECO:0000313|EMBL:ESW11459.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold023412321723795-


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

molecular_function

GO:0005509  calcium ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002341s00037861.1PF13499.1EF-hand_7511132.60E-11
Glyur002341s00037861.1PF13499.1EF-hand_71251854.70E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control98.816
SRR1783600control99.405
SRR1783602moderate drought stress44.827
SRR1811619moderate drought stress44.652

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain378.984
DRR006520Root Summer glycyrrhizin high producing strain377.739
DRR006521Root Winter glycyrrhizin high producing strain15.893
DRR006522Root Winter glycyrrhizin high producing strain14.777
DRR006523Root Summer glycyrrhizin low producing strain485.134
DRR006524Root Summer glycyrrhizin low producing strain487.108
DRR006525Leaf Summer glycyrrhizin high producing strain133.459
DRR006526Leaf Summer glycyrrhizin high producing strain133.721

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)103.090
SRR2868004Drought Stress (root)133.930
SRR2967015Control (root)238.581

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf715.420
SRR9715740Leaf522.415
SRR9715741Leaf847.360
SRR9715739Root117.050
SRR9715742Root462.574
SRR9715743Root392.788

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h861.216
SRR8749028MeJA induced 9h1003.691
SRR8749029MeJA induced 9h1255.325
SRR8749030Uninduced488.379
SRR8749031Uninduced761.248
SRR8749032Uninduced404.682

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root93.097
SRR8400027Control - Root124.758

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved