Gene detail

Gene detail information of Glyur002338s00036380

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G27325.2	hydrolases, acting on ester bonds
NR	XP_004514117.1	PREDICTED: uncharacterized protein LOC101490785 isoform X3 [Cicer arietinum]
trEMBL	tr\|K7MX84\|K7MX84_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G24223.4}

Sequence

Transcript Sequence

>Glyur002338s00036380.1
ATGCTAAGTTTTAGAGCAAAAGTTAGGGTTGGAATTTTGATTACTGTGGTCATAGGGATTTGTCTAGCTGCATTGTATGGTTTGNTGAAGCCTATTTCGAATGGATGTATCATGACCTACATGTATCCAACCTACATTCCTATCACGGCGTCGGAAAGCNTTTCTCCGGCAAAGTATGGCTTGTACTTGTATCACGAGGGATGGAAAAAGATAGATTACAAGGAGCATCTGAAAAAGCTTAGTGGTGTTCCAGTGCTTTTCATCCCAGGCAATGGTGAGCCTGAGGTGCGGTCTATGGCAGCAGAATCTGATAGGGCATATAAGAATGGTCCCCTCGAGCATACATTTTACCAAGAAGCTTCCCTAAGACCTGAAGAAGGAGATGCAGATAAAAATTTATCTGGTTTCCAATTACCCAGCCAGTATACTAGCAGGCTAGACTGGTTTGCCGTTGATCTTGAAGGTGAACATTCTGCCATGGATGGTGCNATTCTAGAAGAACACACTGAATATGTTGTATATGCTATACACAAGATTTTGGACCAATATAAAGTGTCTTATGATGCTCGAACAAGAGGCGCTGCAAATTCTGGGAGTTTGCCAAAAAGTGTGATATTGGTTGGTCACTCTATGGGTGGTTTTGTTGCTAGAGCTGCTGTTATCCATCCCCGTCTTAGGAAATCAGCAGTTGAAACTGTTCTTACACTTTCAACCCCACATCAATCACCTCCTGTGGCATTGCAGCCTTCCTTGGGTCACTACTTTGCACGTGTAAATTCAGAATGGAGAGAAGGATATAAGGTTCAGACCACCAACACGGGACGATATGTGTCTGGTCCAGTACTCTCTCATGTTGTTGTTGTTTCTATTTCTGGTGCATATAACGATTACCAGGTACGGTCAAAATTAGCATCACTTGATAATATTGTGCCACCAACACATGGCTTCATGATCAGCAGTACAGCCATGAAAAATGTGTGGTTGTCAATGGAACATCAGGCTATTTTGTGGTGTAATCAACTGGTTGTCCAAGTCTCACACACACTTCTCAGTCTGATAGATTCCAGAACTGGCCAACCTTTTTCTGATTCTCAAAAGAGACTTGCAGTTTTTGCTAGAATGCTGCGTAGTGGAATATCACATAATTTCAACTGGATGATGCAGTTGCCNTCTTCTAAAGAGTCAATAAACATTCCTGTCCATTATACAAAAGATGCCACTGGATCTGAAGTGCACAGGTCTGTTGCATGTCCTCCCAGTTTTCATTGGAATGATGGGGGCCTTGATAGAGACCTATACATTCAGATAAATGAGGTGACTGTATTAGCAATGGATGGTCGAAGGCGGTGGTTGGACATACAAAAATCGGGGTCAAATGGAAAAAGTCATTTTGTATTTGTGACCAATCTTGAGCCATGTTCTGGAATTAGACTTCATTTGTGGCCTGAAAAGGGGAAATCAGCTCCGGGTTTGCCTCTCAGTGATAGGGTTGTTGAAGTAACGTCAAAGATGATGCGTATTCCCTCCGGTCCAGCACCACGACAGCTTGAACCTGGCAGTCAGACTGAGCAAGCTCCTCCATCTGCTGTATTTTGGTTGGGACCTGAAGATATGCATGGCTTCAGATTTCTTACTATCTCAGTTGCACCTCGTCCGACTTTTTCAGGAAGACCACCACCGGCAACATCCATGGCAGTTGGACAGTTTTTTAACCCAGAGGAAGGAAATAAAGATTTATCTCCATGGTTTATGCTTCAATCTGTCTATTCTCAAAAGGAGTTGCTGTTGGAGGAAGCTCATCCTCTAGCTGTTAAATTATCATTTGCCATTAGCTTGGGTCTTCTTCCTGTTACTTTGTCATTGAAAACTGTCGGCTGTGGAATTAAAAACTCTGGACTTCCAGAAGAGGAAGCTGGAGACCTTGAAAGTAGTAGTAAGAATTCTAATCCACTTCCAGTTGGGTTATTTGTTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02338	31907	40417	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006505 GPI anchor metabolic process

GO:0006886 intracellular protein transport

molecular_function
GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002338s00036380.1	PF07819.8	PGAP1	79	351	4.40E-72
Glyur002338s00036380.2	PF07819.8	PGAP1	79	344	6.30E-70

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.077
SRR1783600	control	9.965
SRR1783602	moderate drought stress	10.841
SRR1811619	moderate drought stress	10.741

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.593
DRR006520	Root Summer glycyrrhizin high producing strain	6.550
DRR006521	Root Winter glycyrrhizin high producing strain	4.595
DRR006522	Root Winter glycyrrhizin high producing strain	3.794
DRR006523	Root Summer glycyrrhizin low producing strain	5.214
DRR006524	Root Summer glycyrrhizin low producing strain	4.971
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.529
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.783

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.977
SRR2868004	Drought Stress (root)	17.310
SRR2967015	Control (root)	18.380

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.263
SRR9715740	Leaf	2.428
SRR9715741	Leaf	2.891
SRR9715739	Root	5.907
SRR9715742	Root	11.220
SRR9715743	Root	10.429

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.432
SRR8749028	MeJA induced 9h	24.438
SRR8749029	MeJA induced 9h	2.914
SRR8749030	Uninduced	4.456
SRR8749031	Uninduced	4.413
SRR8749032	Uninduced	1.489

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.073
SRR8400027	Control - Root	17.618