Gene detail

Gene detail information of Glyur002333s00041518

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G45616.1	6.00E-108	receptor like protein 6
NR	XP_004506724.1	0	PREDICTED: receptor-like protein 12-like [Cicer arietinum]
COG	YP_004775215.1	3.00E-28	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9C9H7\|RLP12_ARATH	1.00E-91	Receptor-like protein 12 (Precursor)
trEMBL	tr\|G7JQ90\|G7JQ90_MEDTR	0	Verticillium wilt disease resistance protein {ECO:0000313\|EMBL:AES86966.2}

Sequence

Transcript Sequence

>Glyur002333s00041518.1
ATGAGAGCACGCATAATCTTTTGGCTTTTCTTGATACCAATTTGCTTAATAATAAATTCCAGCGCCAACATCTCTGTGGTGAATGGCTACAGCCTTGTCCATCAGTGTTCCACATTGCTCCATTTGAAAAACAACCTTACATTCGACCCTGCGAAATCCGAAAAGCTAGCTCTTTGGGACCAAAGTGGTGATTGTTGCCAATGGCATGGGGTAACATGCAACAAGGAACATGTTGTCATGGCCCTTGATCTCAGTCAAGAGTCTATCTCAGGAGGACTNAATGACTCAAGTGCTCTTTTCAGCTTGCAATATCTTCAGAGCTTGAATTTGGCTTTCAATGACTTTGGTTCTGTGATTCCACTAGAGATTCACAAGCTGAAGGATTTGAGGTACCTGAACTTGTCCCATGCTGGCTTTGTGGGGCAGATTCCATTGGAGATTTCTCACCTCACAAGGTTGGTTACTCTTGATTTGTCTTCTTCATTTACTACTTCACATGATCATCAGTTAAAACTTGAGAAGCCAACAGATATAGCAATGCTTGTACAAAACCTCACAGATATCACAGAACTGTATCTAGATGGTGTAGCAATATCTGCCAAGGGAGAGGAGTGGTGTCNTGCTCTATCTTCACTGGAAAAGCTTCGCGTTCTGAGCATGTCGTCATGCAATCTCTCTGGACCTATTGATCCTTCTTCACTAGCTAAGCTTCAGTCATCACTCTCTGTTCTAAAATTGAGCCACAACAATTTGTCAAGCACAGTGCCAGATTCCTTTGCCAATTTCTCCAATTTAGCCACCTTGCAGCTAATTAACTGTGGCTTGAATGGTTCTTTCCCAAGAGACATCTTCCAAATACAAACATTAGAGATCCTTGACATATCAGACAATGAATATCTTGGTGGTTCTTTGCCAAATTACTTCCCACCACTTTCATCTCTTCACACCTTGAATCTTAGCTACACAAATTTCTCAGGACAGCTTCCAGNTGCTATTTCCAATCTGAAGCAGCTGTCTACCATCGATCTGTCTTACTGCCAATTCAATGGGACACTTCCCAGNTCAATGTCAGAACTCACCCAACTTGTCTATCTAGACTTTTCTTCCAATAACTTCACAGGTACAATCCCTTCTTTCAATATGTCCAAGAACCTCACATATTTGTCCCTCTTTCTTAATCATTTCAGTGGGGATTTACCATCCAGCCATTTCAAAGGCCTCACCAATCTTGTCAGCATTGATTTGGGGTTCAATTCTTTCAATGGGAATCTCCCTTCATCTTTACTTAAACTTCCATATTTGAAAGAACTTAAGCTTCCCTATAATCAAATCAGTGGTCACTTGGGTGAGTTTGACAATGAAAGTTCCCCTCTGTTAGAGATGCTTGATTTGGGCAGCAATGATTTACAAGGGCCTATTCCCATGTCTGTCTTTAACCATAGAACACTCCGTATCGTCCAGCTTTCTNCAAACAAGTTTAATGGCACAGTANAGCTGGACTTCATTCGAAGGTTAAGTAATTTGACAATACTAAGNCTTTCACATAACGATCTGTCGGTTGATGTCAACTTCAGAGATGACCAAGACCTGTCACCCTTTCCTAAGTTGATATCTCTGATGTTGGCTTCTTGCAAGCTGGGAAGAATCCCTAGTTTCATAAGAAACCAAACCACACTAATATCTCTTGACCTATCTGGCAATGACATTGATGGAACGATACCTAATTGGGTTTGGCAACATGAATCTCTCATTCACTTGAATCTTTCTAGAAACTTGCTCACAAACTTTGAAGGAGGTTCCTGGAACTTCAGCTCTAACCTTTATACGGTTGATCTCAGTTCCAATCAACTGCAAGGGCCTATTTCTTTCTTTCCAAAGTATGCAAGTTATTTGGACTACTCAAGTAACAAATTCAGCTCCATCACTCCACCAGACATAGGAAATCACCTCCCTTTCATACTCATTCTGTTTCTCTCCAACAACAGTTTTCATGGACAAATCCATGAGTCCTTCTGCAATGCTTCAAGCCTTCACCTGCTAGATCTTTCCCACAATAACTTTGTCGGGACGATTCCCAAGTGTTTCTTTGCATCACTGAGCAGTAATCTCAGGATGTTAAATTTTGGTGGGAACAAGCTCCGAGGTCATATTCCTGATGCTCTTCCGACTTCTTGTGCACTAAGGTTTTTGGATCTAAATGNCAATCTCTTGGGTGGTACTATACCAAAATCTTTGGTCAATTGCCAGAATCTACAAGTCCTAAACCTTGGAAAGAATGCATTAACTGACAGGTTTCCATGTTTCTTAAGTAACATTCCCACCTTGAGAATCATGGTTTTGAGGTCTAACAAACTCCATGGGTCTATTGGATGCCCAAATAGAAATAGCACTGGTGATTGGGGGATGCTTCATATTGTTGACCTAGGCTCCAATAACTTCAGAGGCACAATACCAGGAGCATTGTTAAACAGTTGGAGAGCAATGATGCGTGATGAAGAGGCGGTTGGGCCAGAATTCGGNCACATGTTTTTCGAAATCGTTGATAACTTCCATCCCATGAATTTGAAGGATGTAGTGTCAAATTTGAACAGATATCTTGGAGCAAAACTGGTTAATCTTGTCTCAAACATACCTCGCTCTATCCTTGACCAAGGATTTGCTGATTCTTATGTGGTGGATCTTGCTCGTTATCAGGACTCAATTATTATTGTCAACAAAGGTCAACAGATGAAGCTGGTCAAAATTCAAAGGGCCTTCACTTATGTTGATATGTCAAACAACTATTTGGAGGGGCAAATACCTAATGANCTAATGCATTTCAAGGCACTAAATGCTTTGAACTTGTCACATAATGCATTCCTAGGCCATATACCATCATCTGTAGGAGATTTGAAGAATCTTGAGTCCNTAGACTTGTCAAACAACACTTTCAGTGGAGAAATTCCTCCAGAGCTTTCAAGTCTATCTTTCCTCTCATATCTGAATCTCTCCTACAATCACCTGGTGGGNCAAATTCCTAAGGGTACTCAAATTCAATCATTTGATGCTGATTCATTTGAAGGGAATGAAGAGTTATGTGGACCTCCGCTGAACAACATGTGTAGCGATGATGGAGTGCATGGGTTGTCACCAACAGCATCCGAAACACCTCGTTCCCATGCTGAGAGTTCAATTGATTGGAATTTCTTAAGTGCGGAGTTGGGATTTACTTTTGGCTTTGGAATTTTCATCATGCCCCTTATTTTCTGGAAGAGGTGGAGGTTGTGGTATTCCAAACATGTAGAAGAGATGCTTTACAGGATCATCCCCCAGCTTGATTTTGTCTATGAACGCCACGAAGGGAAGACGTATAGATCTCTGAGGTGGAGGTATTGA

Protein Sequence

>Glyur002333s00041518.1
MRARIIFWLFLIPICLIINSSANISVVNGYSLVHQCSTLLHLKNNLTFDPAKSEKLALWDQSGDCCQWHGVTCNKEHVVMALDLSQESISGGLNDSSALFSLQYLQSLNLAFNDFGSVIPLEIHKLKDLRYLNLSHAGFVGQIPLEISHLTRLVTLDLSSSFTTSHDHQLKLEKPTDIAMLVQNLTDITELYLDGVAISAKGEEWCXALSSLEKLRVLSMSSCNLSGPIDPSSLAKLQSSLSVLKLSHNNLSSTVPDSFANFSNLATLQLINCGLNGSFPRDIFQIQTLEILDISDNEYLGGSLPNYFPPLSSLHTLNLSYTNFSGQLPXAISNLKQLSTIDLSYCQFNGTLPXSMSELTQLVYLDFSSNNFTGTIPSFNMSKNLTYLSLFLNHFSGDLPSSHFKGLTNLVSIDLGFNSFNGNLPSSLLKLPYLKELKLPYNQISGHLGEFDNESSPLLEMLDLGSNDLQGPIPMSVFNHRTLRIVQLSXNKFNGTVXLDFIRRLSNLTILXLSHNDLSVDVNFRDDQDLSPFPKLISLMLASCKLGRIPSFIRNQTTLISLDLSGNDIDGTIPNWVWQHESLIHLNLSRNLLTNFEGGSWNFSSNLYTVDLSSNQLQGPISFFPKYASYLDYSSNKFSSITPPDIGNHLPFILILFLSNNSFHGQIHESFCNASSLHLLDLSHNNFVGTIPKCFFASLSSNLRMLNFGGNKLRGHIPDALPTSCALRFLDLNXNLLGGTIPKSLVNCQNLQVLNLGKNALTDRFPCFLSNIPTLRIMVLRSNKLHGSIGCPNRNSTGDWGMLHIVDLGSNNFRGTIPGALLNSWRAMMRDEEAVGPEFGHMFFEIVDNFHPMNLKDVVSNLNRYLGAKLVNLVSNIPRSILDQGFADSYVVDLARYQDSIIIVNKGQQMKLVKIQRAFTYVDMSNNYLEGQIPNXLMHFKALNALNLSHNAFLGHIPSSVGDLKNLESXDLSNNTFSGEIPPELSSLSFLSYLNLSYNHLVGQIPKGTQIQSFDADSFEGNEELCGPPLNNMCSDDGVHGLSPTASETPRSHAESSIDWNFLSAELGFTFGFGIFIMPLIFWKRWRLWYSKHVEEMLYRIIPQLDFVYERHEGKTYRSLRWRY

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02333	11944	15318	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002333s00041518.1	PF08263.7	LRRNT_2	37	74	1.70E-08
Glyur002333s00041518.1	PF13855.1	LRR_8	214	274	9.10E-07
Glyur002333s00041518.1	PF13855.1	LRR_8	288	347	3.80E-07
Glyur002333s00041518.1	PF00560.28	LRR_1	361	379	0.66
Glyur002333s00041518.1	PF13855.1	LRR_8	534	593	1.20E-06
Glyur002333s00041518.1	PF00560.28	LRR_1	676	699	0.19
Glyur002333s00041518.1	PF13855.1	LRR_8	727	785	9.10E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.914
SRR1783600	control	0.957
SRR1783602	moderate drought stress	0.597
SRR1811619	moderate drought stress	0.598

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.447
DRR006520	Root Summer glycyrrhizin high producing strain	0.429
DRR006521	Root Winter glycyrrhizin high producing strain	0.356
DRR006522	Root Winter glycyrrhizin high producing strain	0.387
DRR006523	Root Summer glycyrrhizin low producing strain	0.311
DRR006524	Root Summer glycyrrhizin low producing strain	0.328
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.328
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.218

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.088
SRR2868004	Drought Stress (root)	0.162
SRR2967015	Control (root)	0.088

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.017
SRR9715740	Leaf	0.987
SRR9715741	Leaf	1.232
SRR9715739	Root	1.153
SRR9715742	Root	7.325
SRR9715743	Root	5.913

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.614
SRR8749028	MeJA induced 9h	6.524
SRR8749029	MeJA induced 9h	1.939
SRR8749030	Uninduced	2.543
SRR8749031	Uninduced	0.422
SRR8749032	Uninduced	0.204

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.236
SRR8400027	Control - Root	0.495