Gene detail

Gene detail information of Glyur002321s00035196

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G33340.1	6.00E-91	ENTH/ANTH/VHS superfamily protein
NR	XP_003549155.1	0	PREDICTED: putative clathrin assembly protein At1g33340-like [Glycine max]
Swissprot	tr\|Q9C502\|CAP11_ARATH	2.00E-109	Putative clathrin assembly protein At1g33340
trEMBL	tr\|I1MQA9\|I1MQA9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G33190.1}

Sequence

Transcript Sequence

>Glyur002321s00035196.1
ATGGGTATGGATATACAAAGCAAGATCCGTGTAGCACTTGGAACAATGAAAGATCATGCTTCAATTGGCAAGGCCATGATGTACAACCATCATCATCAACATGATGGCTTTTCAAGCATAGAGATTGCAGTCCTTCGTGCCACAAACCATGACAATGGTACCATTGATGACAAATACATGCATGAGATCCTCTTCCTTGTGTCAAACTCTCCAAACTCAATCCCTTTCCTCGCCGAAAGGATCTCGCGCCGCCTATCGAAAACTAAAGACCCTCTTGTTTCCCTTAAGACCCTTGTCTTGATCCATCGCCTCCTTAGAGGTGGAAATAGATCCTTTGAGAAAGAGCTATGCAAATCACATGTCTCTGGCCACTTACAAATTATGTGTAACAATTCTGACCCTTTTTCTTCAGTTGGTAATTTTCTACAAAACTATGCATCTTATCTTGAAGAGAGGATGAGTTGGCTCATAAACCAAGCTGGGAAACTTGAACCTGTTGTTGTTATGTCAAAAGGGTTAGAGTTTAGGAGCTATGATGAGAAGAAGTACTTTGACATGGCATTTAGGACATTGCCTAAGTGTCAAGTGCTTATTGATAAAGTGTTGGAATGTTCTCCACCACATGAGATATTCTTGAGTTTTGATCATCATCATCATCATCATCATAATCATCATCATGGACTTGCTCATGTTGCTATGAGCAACACATTGAGGGAGAGCTTCCAAGTTTACATGACATTCTCTGAGGGGATTGCTGCTCTTGTCAACATGTTCTTTGATCTAACCGTGCCGGCCAGAGGCCTAGCGTGCGATATTCTGAGAAAAGCTTCTGTTCAGAGCCAAAGGCTTCATGATCTATATGAGAATTGTAAGCAAATGGTTGAGAACAAGAATTTGGAATACCCNTGTGTTGAGATTATTAGTATGAGTCATGTTATGGCATTGGATCAATTTGGAATTGGATGTCCACAAAATCAACTTGCAGCTTCTTCACATGTCTCTATGTCAAAGCCTCCTCCAATTTCAACAGAGATAGAAGAGTTGGAAGTGGAAGCAAAAGGAAGCAAAAAAGGTGAAGAGAAAATAATTGATATGGATTTGTCACCAAGACCAAATCTTTTTTCATGGACACTAGAGACTAAAATAAGCAAGGTTTGGGTAGTGTTTGAAGATGAAGTCCCTATTAATGAATCAAAGGTCCTTCTTCCAGCACAACAAAAGCTTGGAGTNGGAGGTGTTAATGATGTTAGTGATATGGAAAGTGAATATGGTAGGCCAAAGTGTATTCCTCAATCCATTTTCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02321	32211	33515	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0048268 clathrin coat assembly

cellular_component
GO:0030136 clathrin-coated vesicle

molecular_function

GO:0005543 phospholipid binding

GO:0005545 1-phosphatidylinositol binding

GO:0030276 clathrin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002321s00035196.1	PF07651.11	ANTH	38	318	9.80E-51

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.342
SRR1783600	control	1.262
SRR1783602	moderate drought stress	0.982
SRR1811619	moderate drought stress	0.935

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.959
DRR006520	Root Summer glycyrrhizin high producing strain	4.856
DRR006521	Root Winter glycyrrhizin high producing strain	1.169
DRR006522	Root Winter glycyrrhizin high producing strain	1.235
DRR006523	Root Summer glycyrrhizin low producing strain	1.623
DRR006524	Root Summer glycyrrhizin low producing strain	1.611
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.139
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.142

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.253
SRR2868004	Drought Stress (root)	9.933
SRR2967015	Control (root)	12.794

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.443
SRR9715740	Leaf	0.445
SRR9715741	Leaf	1.152
SRR9715739	Root	0.946
SRR9715742	Root	7.140
SRR9715743	Root	6.203

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.029
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.875
SRR8400027	Control - Root	5.877