Gene detail

Gene detail information of Glyur002317s00041401.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G47570.1	0	Leucine-rich repeat protein kinase family protein
NR	XP_003616620.1	0	Receptor-like protein kinase [Medicago truncatula]
COG	YP_004775215.1	4.00E-54	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGP4\|Y3475_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor)
trEMBL	tr\|I1M7V3\|I1M7V3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G06570.1}

Sequence

Transcript Sequence

>Glyur002317s00041401.1
ATGAGGGTTTTTTTTATCATGTTTCTTCTCTGTTTTGGCTCCCAAATGTTGGGGTACTACAAGCCCTTAGCAACAGTTGCTCTTGCTTTGAGTCTAGAGACCGATAAACTTGCTTTGCTTGCTTTGAAGGAAGAGCTTACCAATGGTGTGCCTGATTCTCTGCCATCATGGAACGAGTCTCTTCATGTCTGTGAATGGCAGGGTGTTACATGTGGTCACCGCCACATGAGAGTCTCTGTCTTGCACTTGGAAGATCAAACCTGGGGAGGTACTCTTGGACCAGCCTTGGGTAATCTAACATTCCGCAGAGAGCTCATCCTTCCCAACATCAAATTGCATGGTGAAATCCCAAGACAAATTGGTCGTTTGAAACGGTTGCAGGTTCTTAACTTGAGCACGAACACTCTTCAAGGAGAGGTTCCTATGGAGCTCAGTAACTGCACCAATCTCCAGGTAATAAGCTTGATGTACAATCGACTCACTGGAAAAGTGCCCGCATGGTTTGGATCTATGATGCAGCTTACTGTGTTGCTTCTTCGTGCCAACAATCTAGTTGGTACTATCCCGCCTTCCTTGGGAAACATTTCATCACTCCAGATTATGACGCTTTCAAGAAATCAATTGGAAGGGAGTATACCTCATTCTTTGGGTAGGTTGTCAAATTTGAAAGAGTTGATTCTGAGTTTAAATATTTTGTCAGGTGAAGTCCCTCATTCTCTTTACAACCTTTCACATCTTCAATATTTTGTTCTCGGGGGAAACCAATTATTTGGTACTCTTCCACCAGATATACATCTTGCTTTTCCGAATCTTCTCGGTTTCTTGGTAGGAGGGAACAACTTCACGGGTACATTCCCGTCTTCAATATCCAACCTCACCCAATTGCAATTATTTGATATAACCTTCAATGGTTTTCATGGGTCAATACCTCTTACTTTGGGAGGGTTAAACAAACTCCAGAGGTTTAACATTGGTACTAATAGTTTCGGGAGTGGAAGAGCTCATGATTTGGATTTCCTTTCCTCATTAACCAATTGTACTCAATTGCAAGAACTAATTTTAGAGTACAATAGATTTGGTGGTGTGTTGCCAGATCTTATAGGCAACTTTTCTAAAAAACTCACTCTTCTTAGTATGACGAGTAATCAAATATCTGGAGTGATACATGATAGAATTGGACAACTAATAGGTTTGACTGAGTTCGATATGGGGCAGAATTTCCTTGAGGGAACAATTCCATATTCAATTGGAAAGCTTCAGAATCTAGTAAGATTGGTCTTGGAGGAAAACAATTTCTTTGGTAATATTCCTGCTGCCATTGGCAATCTTACTATGTTGTCTGAACTTTATCTACGCCGCAATAAATTTGAAGGAAACATTCCATTTACCCTCAGATATTGCACCAAGTTGCAGACAGTTACTGTTTCTCACAACAACTTGAATGGTGATATACCCAATCAAACATTTGGCTATCTACAAGGTCTGATAAATCTTGTCTTGTTCAACAACTCCTTGACCGGTGCCCTTCCTTCTGAGTTTGGTAAGTTGAAGCAACTTTTCCTATTGAATTTAGCTGGAAACAAGCTCTCTGGTGAAATTCCCGTGGAGCTTGCATTGACATACCTTTTGCTGTACAACAACTTTTTCCATGGAAGTCTACCTTCCTTCTTGGGCTCTTTGAGATCCCTTGAATTCTTGGACCTTTCTAAAAACAACTTCTCAGGCACAATCCCCCTTGAAGTAGCAAATCTCACATTTTTGAATACTTTAAACTTGTCCTTTAACAATCTCTTTGGTGAGGTTCCCATAGGAGGTGTCTTTAGCAATGTCACGGCAATTTCACTAATTGGAAACAAGGATCTTTGTGGGGGGATACCTCAGTTGAAGCTTCCTGCATGCTCTAGTTCACCCTTTAAGATACACAAGAGATCTCTTAAAATGAAATTTATTCTCATCATTGTAGTTGGTGGGGTTTTCATCTTTTTCATGGTTTTTACCACTCTCCATTATCTCCGCAATAAGCCCAAAAAGTCATTTTCTTCACCATCTCTTCAATATAAGCACTTAAGGGTTTCTTATGGAGAGCTACATGAAGCAACGAATGGATTTTCTTCATCCAATTTGATAGGCACGGGAAGTTTTGGTTCCGTTTACATAGGATCTCTTCTCCACTTTGAAAGACCTATTGCTGTGAAGGTGCTGAATCTTGAAACAAGTGGGGCATCGAAGAGTTTCACTGCTGAATGCAAAGCCCTGGGAAAGATGAAACATCGGAATCTTCTCAAGATCCTGACATGTTGTTCAAGTGTTGATTATAACGGTGAAGATTTCAAGGCTATAGTTTTTGAGTTCATGCCGAATGGGACTCATGCATTGGATTATCTTCACTATGAATCCGAGCAAGTTGTTGTTCACTGTGATGTTAAACCAAGCAATGTTCTTCTTGATGATGAGATTGTTGCCCACTTGGGAGATTTTGGATTAGCTACGCTCGTTCATGGGGCCATGAAGCATTCTAGTAATGATCAAGTTAGCTCCTCTGCAATTAAGGGAACGATTGGATATGTTCCCCCAGGTGGCCCAGTATCACCACAGGGAGATATATACAGCTACGGGATTCTTCTGTTGGAGATCCTCACTGGAAAGAGACCGACGGATAACATGTTTGGTGAGGGTCTAAGTCTACACAAGTTTTGTAAGATGGCAGTTCCTGATGGAATCGCTGAGATATTGGATTCACGTTTGCTTGTGCCATTTGGTGAAGATCAGACAGGGATTGTGGAAAACAACGTTAAGGAGTGTCTGGTGTCCTTTGCTAGAATTGGAGTTGCATGTTCTGAGGAAATCCCTACTCACCGAATGCCCATAAAAGATGTTATAGTAAAGCTGCATGCAATGAAACAAAAGTTGCCTTGCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02317	32197	35933	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002317s00041401.1	PF08263.7	LRRNT_2	33	71	1.30E-09
Glyur002317s00041401.1	PF00560.28	LRR_1	197	219	1.2
Glyur002317s00041401.1	PF13855.1	LRR_8	469	529	8.00E-07
Glyur002317s00041401.1	PF00560.28	LRR_1	562	584	0.28
Glyur002317s00041401.1	PF00069.20	Pkinase	706	789	2.40E-07
Glyur002317s00041401.1	PF00069.20	Pkinase	790	887	3.20E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.019
SRR1783600	control	0.016
SRR1783602	moderate drought stress	0.016
SRR1811619	moderate drought stress	0.030

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.049
DRR006520	Root Summer glycyrrhizin high producing strain	0.035
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.193
DRR006524	Root Summer glycyrrhizin low producing strain	0.065
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.645
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.554

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.011
SRR2868004	Drought Stress (root)	0.029
SRR2967015	Control (root)	0.051

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.278
SRR9715740	Leaf	13.004
SRR9715741	Leaf	13.955
SRR9715739	Root	0.008
SRR9715742	Root	0.097
SRR9715743	Root	0.056

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.050
SRR8749028	MeJA induced 9h	0.110
SRR8749029	MeJA induced 9h	0.104
SRR8749030	Uninduced	0.071
SRR8749031	Uninduced	0.079
SRR8749032	Uninduced	0.061

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.042
SRR8400027	Control - Root	0.069