Gene detail

Gene detail information of Glyur002314s00032890

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G26520.1	9.00E-22	tonoplast intrinsic protein 2
NR	XP_003542571.1	5.75E-27	PREDICTED: aquaporin TIP1-1-like [Glycine max]
COG	YP_007059520.1	3.00E-13	MIP family channel protein [Rivularia sp. PCC 7116]
Swissprot	tr\|P50156\|TIP11_ORYSJ	1.00E-26	Probable aquaporin TIP1-1
trEMBL	tr\|I1LZA6\|I1LZA6_SOYBN	2.00E-27	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G20940.1}

Sequence

Transcript Sequence

>Glyur002314s00032890.1
ACCGGGCCATCATTGTAATATCAAATATGAAATGAAGAGAGNGACATTCAAAACTATGAATAAGACAAGACGATAAAATAGAGAGATAAATCAAACAAGTAGACTTAGATAATGATATATTGTATCCTGAACGATCATGTAACATAACAATTAAAGAAACAGAACCAAGTAGGAGCTTCATCATCATCACCACTAAGATCAAGCTCCACCTATTCATCAGAAAAAAAAACATCCCTTGAAATACAAAGCATGCTTACACAATCAAGATATTAATATTATATATCATTAATCCATAAGAGCTTTCATATCTTTTTCTCTCTTTTTTTAATTCCTAATAATTATTATTGGTGAGTTGAGATATGATTCTCCTCCTCCAAGCTAACAGTATTCACTGCCGTGAGCCCGCAACGCTCACCTCACAAATCACAAAATCGTGTCGTTCACAGTCGTCAGAGAGCGAGTACTGTCCAGACCCCCTCACCTCGTCAGACCCCCCTCATCCATGGTGCCTTTGTCGTACCTCACTTNCGTACCATCTTCGCATAACACAGACTTTCCCCTTTCGTTCTTTTCTTTTCCCCTTTCCCCTTTCTTTCACTACCATTCTCCTTTCCGTTTTTTATTTGCATTTTTTCTTATCTTTTGCTGTACNGATTTTTCATTGGAGTCTGGACAAAGGTTGGCGGTGAGACACCTCAACATGCTGATGAGCTCACGAAAGGCAAGAACAACGATGGGGATTGAGTTTCGTGACTATGAAACAAATGCCAAGGAAGCTGAGAAGAACGTGAAGCCGATGGAAGTAACTGCGGTTGGTATTAATACTGAATGGGGGCTTCTAACTGCTAGCATTTCAGAAGACAATGGCATGATTGATGATGATGATGATGGGAGTGGGGAGCGCGGTGGTGTTGGAGACGGTGATGACGTTCGGTTGGTGTACACGGTGTACGCAACTAGCGTTGACCCCAAGGCCAAGATCAATTTCGATAGCACGACGAATGTTTTGGTGGGTGGGCCTTTTGATGGGGCATCCATGAACCCGGCTTTGTCGTTTGGGCCTGCTCTTGTTAACTGGAGCTGGGCCAACCATTGGGTCTACTGGATTGGGCCCCTAGTTGGTGGTGGGCTTGCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02314	34823	37282	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002314s00032890.1	PF00230.15	MIP	146	211	1.80E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.013
SRR1783600	control	0.874
SRR1783602	moderate drought stress	2.405
SRR1811619	moderate drought stress	2.379

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.209
DRR006520	Root Summer glycyrrhizin high producing strain	1.706
DRR006521	Root Winter glycyrrhizin high producing strain	3.113
DRR006522	Root Winter glycyrrhizin high producing strain	2.919
DRR006523	Root Summer glycyrrhizin low producing strain	0.384
DRR006524	Root Summer glycyrrhizin low producing strain	0.614
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.215
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.099

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.641
SRR2868004	Drought Stress (root)	1.198
SRR2967015	Control (root)	1.103

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.552
SRR9715740	Leaf	0.271
SRR9715741	Leaf	0.310
SRR9715739	Root	0.426
SRR9715742	Root	0.199
SRR9715743	Root	0.248

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.773
SRR8749028	MeJA induced 9h	1.031
SRR8749029	MeJA induced 9h	0.630
SRR8749030	Uninduced	0.368
SRR8749031	Uninduced	0.112
SRR8749032	Uninduced	0.236

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.521
SRR8400027	Control - Root	0.921