Gene detail information of Glyur002314s00032885 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G28200.1 | 6.00E-37 | C2H2-type zinc finger family protein |
| NR | XP_006428462.1 | 9.17E-78 | hypothetical protein CICLE_v10012395mg [Citrus clementina] |
| Swissprot | tr|Q681X4|ZAT5_ARATH | 6.00E-54 | Zinc finger protein ZAT5 |
| trEMBL | tr|V4SM30|V4SM30_9ROSI | 3.00E-78 | Uncharacterized protein {ECO:0000313|EMBL:ESR41702.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02314 | 22534 | 23328 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
| EAR motif-containing Proteins | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002314s00032885.1 | PF13912.1 | zf-C2H2_6 | 96 | 121 | 3.90E-07 |
| Glyur002314s00032885.1 | PF13912.1 | zf-C2H2_6 | 168 | 192 | 2.10E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.343 |
| SRR1783600 | control | 0.297 |
| SRR1783602 | moderate drought stress | 0.453 |
| SRR1811619 | moderate drought stress | 0.474 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.120 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.211 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.728 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.263 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.195 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.164 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.346 |
| SRR2868004 | Drought Stress (root) | 4.515 |
| SRR2967015 | Control (root) | 4.447 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.901 |
| SRR9715740 | Leaf | 0.305 |
| SRR9715741 | Leaf | 0.356 |
| SRR9715739 | Root | 0.102 |
| SRR9715742 | Root | 0.413 |
| SRR9715743 | Root | 0.322 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.662 |
| SRR8749028 | MeJA induced 9h | 22.112 |
| SRR8749029 | MeJA induced 9h | 8.186 |
| SRR8749030 | Uninduced | 18.020 |
| SRR8749031 | Uninduced | 6.276 |
| SRR8749032 | Uninduced | 3.641 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.512 |
| SRR8400027 | Control - Root | 1.373 |