Gene detail information of Glyur002314s00032882


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G03530.19.00E-64RAB GTPase homolog C2A
NRXP_003535201.19.69E-83PREDICTED: ras-related protein RABC2a [Glycine max]
COGYP_008431664.11.00E-15hypothetical protein N186_01315 [Thermofilum sp. 1910b]
Swissprottr|O49841|RAC2A_ARATH1.00E-79Ras-related protein RABC2a
trEMBLtr|Q40206|Q40206_LOTJA1.00E-81RAB1X {ECO:0000313|EMBL:CAA98163.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold02314748211407+


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
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Gene Ontology

biological_process

GO:0007165  signal transduction

GO:0007264  small GTPase mediated signal transduction

GO:0015031  protein transport


cellular_component

GO:0005622  intracellular

GO:0016020  membrane


molecular_function

GO:0005525  GTP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002314s00032882.1PF00071.17Ras161635.20E-44
Glyur002314s00032882.2PF00071.17Ras16722.00E-12
Glyur002314s00032882.2PF00071.17Ras731412.20E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.150
SRR1783600control17.399
SRR1783602moderate drought stress25.938
SRR1811619moderate drought stress25.962

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain28.517
DRR006520Root Summer glycyrrhizin high producing strain27.763
DRR006521Root Winter glycyrrhizin high producing strain16.531
DRR006522Root Winter glycyrrhizin high producing strain15.113
DRR006523Root Summer glycyrrhizin low producing strain71.216
DRR006524Root Summer glycyrrhizin low producing strain67.604
DRR006525Leaf Summer glycyrrhizin high producing strain50.072
DRR006526Leaf Summer glycyrrhizin high producing strain48.503

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)29.051
SRR2868004Drought Stress (root)25.994
SRR2967015Control (root)37.518

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf47.034
SRR9715740Leaf47.463
SRR9715741Leaf54.559
SRR9715739Root7.895
SRR9715742Root40.898
SRR9715743Root33.840

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.784
SRR8749028MeJA induced 9h1.042
SRR8749029MeJA induced 9h2.478
SRR8749030Uninduced0.405
SRR8749031Uninduced1.248
SRR8749032Uninduced0.987

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root22.176
SRR8400027Control - Root20.105

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved