Gene detail information of Glyur002311s00032998 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54910.1 | 0 | DEA(D/H)-box RNA helicase family protein |
| NR | XP_003519572.1 | 0 | PREDICTED: DEAD-box ATP-dependent RNA helicase 32-like isoform X1 [Glycine max] |
| COG | YP_004766565.1 | 6.00E-59 | ATP-dependent RNA helicase DeaD family protein [Megasphaera elsdenii DSM 20460] |
| Swissprot | tr|Q9FFT9|RH32_ARATH | 0 | DEAD-box ATP-dependent RNA helicase 32 |
| trEMBL | tr|I1JJ86|I1JJ86_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G45990.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02311 | 27401 | 32943 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002311s00032998.1 | PF00270.24 | DEAD | 91 | 261 | 3.70E-41 |
| Glyur002311s00032998.1 | PF00271.26 | Helicase_C | 336 | 408 | 1.40E-18 |
| Glyur002311s00032998.1 | PF13959.1 | DUF4217 | 452 | 511 | 4.60E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.897 |
| SRR1783600 | control | 12.877 |
| SRR1783602 | moderate drought stress | 14.980 |
| SRR1811619 | moderate drought stress | 15.018 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.902 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.086 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.249 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.934 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.210 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.955 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.945 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.886 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.545 |
| SRR2868004 | Drought Stress (root) | 10.486 |
| SRR2967015 | Control (root) | 10.481 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.441 |
| SRR9715740 | Leaf | 6.269 |
| SRR9715741 | Leaf | 5.183 |
| SRR9715739 | Root | 0.592 |
| SRR9715742 | Root | 5.160 |
| SRR9715743 | Root | 4.218 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 28.959 |
| SRR8749028 | MeJA induced 9h | 22.963 |
| SRR8749029 | MeJA induced 9h | 25.915 |
| SRR8749030 | Uninduced | 5.595 |
| SRR8749031 | Uninduced | 4.643 |
| SRR8749032 | Uninduced | 5.179 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.930 |
| SRR8400027 | Control - Root | 10.509 |