Gene detail

Gene detail information of Glyur002311s00032994

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G30580.1	6.00E-15	Phospholipid/glycerol acyltransferase family protein
NR	XP_007146459.1	4.20E-171	hypothetical protein PHAVU_006G042300g [Phaseolus vulgaris]
COG	YP_003914551.1	1.00E-32	1-acyl-sn-glycerol-3-phosphate acyltransferase [Ferrimonas balearica DSM 9799]
Swissprot	tr\|Q42670\|PLSC_COCNU	2.00E-143	1-acyl-sn-glycerol-3-phosphate acyltransferase
trEMBL	tr\|V7BN39\|V7BN39_PHAVU	2.00E-171	Uncharacterized protein {ECO:0000313\|EMBL:ESW18453.1}

Sequence

Transcript Sequence

>Glyur002311s00032994.1
TTCATTTGAATGTAGTATACCATACCATCTGTTCGTCAAAAAAAAAAAGTATACCATACCATCTTATCCCAGTTCTCACTTCTTCTCAGACATAAATTCTAGTGTCTCTCTCTTCACCCTCTAAGCAAGACCATACACTTCTTTTCGTGTCATTATTCTACCTTAGTTTGTGGTCTCGTGGATTTTGCTTATATACCCCACACACAAGGCCACAACCATCTTCAACATAGAGATTGACTTCTGCTGGTTTCCTTCACTTCCTCGGGAAAGTTTCGGACACTTGGNGGCCTCTATTACTATTAGTATTAAAGTCTAATTCACTGGTTTTACCATGGAGAACACTGGAGGAGGTGGTGCACTTTTGAGGAATAGAAGGTTCGACAGTTTCTTGAATACAAGCTCTGGCCAAAGGGTAGAAGAAACTGCTATAATTTTAGTGAAATATGGATCAGGACAAAGGCCAAGGAAAGAGGATGTATATATAGATGATGATGGCTGGGTTTCCTCAATCNTATCTTGGATCAGAATTGCCACGTGTTTTGTGTCTATGATGGTCACAACATTCATATGGGCATTGATCATGGTTGTGCTCATACCATGGCCCTACAAGAGAACTAGACAAGGAAACATTTATGGGCATGTGACTGGTAGAATGATGATGTGGATTCTNGGTAATCCTATAAAGATTGAAGGTGCTGAGTACTGTAAGGAGAGGGCCATTTACATCAGCAATCATGCATCTCCAATAGACATATTTCTTACAATGTGGTTGACTCCTACAGGCACTGTTGGCATTGCCAAGAAGGAGATAATATGGTATCCTCTATTTGGGCAACTTTATGTTTTGGCCAATCATCTTCGTATAGATCGGTCCAACCCAGCTGCGGCTATTGAGTCCATAAAAGAGGCAGCACGTGCAGTTGTGNAAAACAATCTGTCCCTTATAATTTTTCCCGAGGGTACCAGGTCCAAGAATGGACGACTNCTTCCTTTCAAAAAAGGTTTTGTTCATTTAGCGCTACAAACGCGCCTTCCGATTGTTCCAATGGTCTTGACAGGAACTCATCTAGCATGGAGGAAAGGNGGTTTACGCGTCCGGCCAGCGCCTCTTACTGTCAAGTATCTCCCTCCTATAAGTACTGAAAATTGGAAGGGTGACAAGATTGATGACTATGTCAAAATGGTGCACAACTTGTATGTTGAACACCTTCCTGAGAATCAGGCTCCTCTGCCTTGAAAAAGTTGCAAACCAGTAACTACCAATTCTTATTAGCTGAGGTACCTCTTCCATACAATGTTGAGCAAGGTTCCNCTAGGTCATGTTAACTGCTGCAATTAATATGCATAAATTGTTTTTAACCAATTATTATATAGCTAAATTCCTTGTAATAAGCTTGGCTAGCATGCTTAATCTATATTTCATTGATCCTGTCAAATTCTTCCTTGATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02311	16571	20189	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0008654 phospholipid biosynthetic process

cellular_component
GO:0016020 membrane

molecular_function

GO:0003841 1-acylglycerol-3-phosphate O-acyltransferase activity

GO:0016746 transferase activity, transferring acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002311s00032994.1	PF01553.16	Acyltransferase	117	241	9.20E-31
Glyur002311s00032994.2	PF01553.16	Acyltransferase	117	241	9.20E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.810
SRR1783600	control	0.869
SRR1783602	moderate drought stress	1.992
SRR1811619	moderate drought stress	2.220

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.046
DRR006520	Root Summer glycyrrhizin high producing strain	0.008
DRR006521	Root Winter glycyrrhizin high producing strain	0.075
DRR006522	Root Winter glycyrrhizin high producing strain	0.142
DRR006523	Root Summer glycyrrhizin low producing strain	0.524
DRR006524	Root Summer glycyrrhizin low producing strain	0.449
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.263
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.984

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.705
SRR2868004	Drought Stress (root)	9.547
SRR2967015	Control (root)	6.317

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	50.701
SRR9715740	Leaf	65.617
SRR9715741	Leaf	60.066
SRR9715739	Root	1.507
SRR9715742	Root	0.364
SRR9715743	Root	0.745

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.010
SRR8749028	MeJA induced 9h	5.560
SRR8749029	MeJA induced 9h	4.302
SRR8749030	Uninduced	1.268
SRR8749031	Uninduced	0.917
SRR8749032	Uninduced	0.746

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.344
SRR8400027	Control - Root	6.371