Gene detail

Gene detail information of Glyur002309s00039179

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G36930.1	6.00E-170	Disease resistance protein (TIR-NBS-LRR class) family
NR	XP_003604607.1	0	TIR-NBS-LRR RCT1 resistance protein [Medicago truncatula]
COG	YP_001520699.1	2.00E-06	TPR domain-containing protein [Acaryochloris marina MBIC11017]
Swissprot	tr\|Q40392\|TMVRN_NICGU	3.00E-165	TMV resistance protein N
trEMBL	tr\|A0A072USN6\|A0A072USN6_MEDTR	0	Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313\|EMBL:KEH28850.1}

Sequence

Transcript Sequence

>Glyur002309s00039179.1
ATCTATTATTTATTTTTCATCTCTCTCTTTATCTCTCTAGATGTGTACACCTCTTAGGTGTTTATGCAATATTTTCCAAACACAAAACATGAAATCCCCTCAAANAACGCCGCAAGTCCTCTGTTCATCTCGTCTTATTTATTCACAACACAAGGTTAGCCTAACTATTCCGCAGTTCTTCCCCACTTGTAAAGGACACGGACACAGACACATAGAGAATCTTCAACGTAGATATTACAAGCATCTGACAAGAAAACATTGATCTCTTCCCACACTCCTCCCAAACAATGGAAAAGAAAACAAAAATAATGAATCACAGACCATCTATGTCTTCCCCCACTTCCCCTGAAGTGCCGTTTTCTACTCCGTNGCAGAGTACAAGAGTGTACGATGTGTTCTTGAGTTTCAGAGGGGAAGACACTCGTGCTTCCTTCACTTCTCACCTCCGTGCCTCCCTTCAAAACGCCGGAATTAACGTTTTCAGGGACGATGATTCGCTCGAAAGGGGAGAACACATCTCAGCATCACTACTGCGAGCAATCGAAGAGTCTCGAATCTCTGTGATTGTTTTCTCCAGAAATTACGCAAATTCGCGGTGGTGTCTGCAAGAGTTAGTGAAGATAATGGAGTGTCACAGAACCATAGGGCAGGTGGTACTGCCAGTGTTCTGCGATGTTGATCCCACCGAGATACGTCATCAAAGGGGCGAGTTTGGAAATGCATTTCGAAATCTTTTGAACAGAATTTCAAAGGAGGAAGATGAGTTGCTGAATTCGGCGAAGAGTTGGAGAGAGGCGCTTCGTGAGGCGGGTAGCATTGCAGGATTTGTAGTCCCAAATTCCAGGAATGAAAGTGAGATTATCAAGGAAATTGTTGAAAATGTTACACGTTTGCTTGACAAGTCAGACTTGTTCATTGCTGATAATCCAGTGGGGGTTGATTCTCGAGTGCAAGATATGATTCAACTGCTAGANCNCCAACGACCAAATGATGTTCTTCTACAAGGGATGTGGGGCATGGGAGGAATTGGTAAAACAACCATTGCAAAAGCCATTTACAATGAAATTGGCCGCAATTTTGAAGGTAGGAGTTTCCTTGCAAATATTAGGGAAGTTTGGGAGCAAAAGGNTGGACAAGTGAATTTACAAGAACAACTTTTGTTTGATATCTTCAAAGAAAGGGCAACCAAGATACAACACATTGATTCAGGCAAAATCATATTAAAGGAAAGACTCTGCCATAAAAGAGTACTTCTTGTGCTTGATGATGTGGATAATTTGGATCAAATGAATGCTTTGTGTGGAAGTCATGAGTGGTTTGGATCAGGCAGTAGAATAATCATCACAACCAGAGATAAGCATATACTTACAGGGAATAGAGTTGACCGAGTATACATGATGAAAGAAATGAATGAAAGTGAATCTATTGAGCTTTTCAGTTGGCATGCATTCAAGCAAGCGAGTCCTAGACAAGATTTTGCTGGAATTTCCAGAAATGTGGTTGAGTATTCTGGGGGATTGCCGCTAGCTCTGGAAGTCCTTGGGTCCTATTTGTTTGATAGGGGGTTAGCAGAGTGGAAGTGTGTGTTGGAGAAACTCAAAAGAATTCCCAATGATCAAATACAGAAGAAGTTAAAAATAAGCTATGATGGTTTAAATGATGATACTGAGAAAGAAATATTCCTTNACATAGCTTGTTTCTTTATTGGAATGGACCGAAATGATGTTATAGATATATTAAATGGCTGTGGACTATTTGCAGAAATTGGAATAAGTGTCCTAGTTGAGCGAGGCCTTGTAACTGTTGATGATAAGAACAAACTTGGAATGCATCATTTGCTGCGAGATATGGGAAGAGAAATCATTCGTGAGAAATCACNNAAAGAGCTTAAGGAGCGTAGCAGATTGTGGTTTCATGAGGATGTGCTTAATGTATTATTAGATCAAACTGAAACAAAAGCTGTTGAGGGATTGACTTTGAAGTTGCCAAGAAATAATGCAAAATCTTTTAGTACTAAAGCATTTGAAAACATGAAGAGTCTCAGATTGCTTCAACTTGCTGGTGTACAACTTGATGGAGATTTTAAATATCTTTCAAGAAATCTGAGATGGCTATGTTGGAATGGATTTCCTTTAACATCAATACCCACAAACTTTTATCAAAGAAATTTAGTTTCCATTGAGCTAGAAAACAGCAACGTCAAACTTGTGTGGGAAGAGACCNAGAGGATGGAGAATTTGAAAATTCTCAATCTTAGTCATTCTCATTATTTGACACAGACCCCAGACTTTTCAAACTTGCCTAATCTTGAAAAGCTAGTACTGATTGATTGTCCAGGGCTGACTGAGGTTTCCCATAGCATTGGACATCTCAATAAAGTTCTTCTGATAAACTTGAAAGACTGTATTAGCCTTTGCAACNTTCCAAGAAACATCTATAAGTTGAAATNTCTGAAAACTCTAATTCTTTNTGGGTGTTTGAAGATTGACAAGTTGGAAGAGGACTTGGGACAAATGGAATCTTTAACGATTTTGATTGCAGATAACACTGCAATAACAAAAGTNNCNTTTTCAATAGTAAGGTCAAAAAGCATTGGATATATTTCCTTGTGCGGCTATGAAGGATTCTCCCGTGATGTGTTTCCATCTATCATTGGGTCTTCGATGTCACCAACGAATAGTAGTTCCCACAAACTATCATCTATCTCGAAGGACCTTCCAAAGCTTCCAAGTCTTTNGGTGGAATGTGGCTCAGANCTTCAACTTTCTCGAGATACAACAATAATTTTGGAAGCTTTGCATGCTGCAAATGAAAAGGAATTGGAATCAACTGCAACTACATCACAAATGTCAAATATGAAAACTTCTAAATTTATTGAAGGCGTCGCTCAAATGCACATTTCACGACCAAAAAATTCCTTNAAATCTCTCTTAATTCAAATGGGAATAAATGGCCAAGTCACTAATATTCTGAAAGAGAGCATTTTACAGGTTTCACACTCTCTGCTGCTCTCCCTTTGCATGTATCTAATTTTATATTTGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02309	20446	24109	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002309s00039179.1	PF01582.15	TIR	36	172	1.30E-37
Glyur002309s00039179.1	PF00931.17	NB-ARC	219	488	1.70E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.499
SRR1783600	control	0.566
SRR1783602	moderate drought stress	0.374
SRR1811619	moderate drought stress	0.427

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.578
DRR006520	Root Summer glycyrrhizin high producing strain	5.615
DRR006521	Root Winter glycyrrhizin high producing strain	0.365
DRR006522	Root Winter glycyrrhizin high producing strain	0.380
DRR006523	Root Summer glycyrrhizin low producing strain	2.571
DRR006524	Root Summer glycyrrhizin low producing strain	2.490
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.095
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.993

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.719
SRR2868004	Drought Stress (root)	1.309
SRR2967015	Control (root)	1.104

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.771
SRR9715740	Leaf	3.201
SRR9715741	Leaf	0.876
SRR9715739	Root	0.536
SRR9715742	Root	0.733
SRR9715743	Root	0.881

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.997
SRR8749028	MeJA induced 9h	1.282
SRR8749029	MeJA induced 9h	0.350
SRR8749030	Uninduced	0.854
SRR8749031	Uninduced	0.267
SRR8749032	Uninduced	0.155

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.917
SRR8400027	Control - Root	1.788