Gene detail information of Glyur002309s00039176 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G01170.1 | 9.00E-42 | Protein of unknown function (DUF740) |
| NR | XP_004302647.1 | 3.74E-162 | PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Fragaria vesca subsp. vesca] |
| Swissprot | tr|Q9SS80|U503A_ARATH | 2.00E-106 | UPF0503 protein At3g09070, chloroplastic (Precursor) |
| trEMBL | tr|I1J775|I1J775_SOYBN | 9.00E-160 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G27360.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02309 | 4092 | 5960 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002309s00039176.1 | PF05340.7 | DUF740 | 3 | 596 | 6.10E-158 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.955 |
| SRR1783600 | control | 17.830 |
| SRR1783602 | moderate drought stress | 15.508 |
| SRR1811619 | moderate drought stress | 15.943 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 31.947 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.008 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.953 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.855 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.638 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.601 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.461 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.096 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 26.267 |
| SRR2868004 | Drought Stress (root) | 17.233 |
| SRR2967015 | Control (root) | 21.294 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.297 |
| SRR9715740 | Leaf | 0.484 |
| SRR9715741 | Leaf | 0.905 |
| SRR9715739 | Root | 13.222 |
| SRR9715742 | Root | 13.511 |
| SRR9715743 | Root | 11.236 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.750 |
| SRR8749028 | MeJA induced 9h | 5.272 |
| SRR8749029 | MeJA induced 9h | 3.192 |
| SRR8749030 | Uninduced | 0.537 |
| SRR8749031 | Uninduced | 0.091 |
| SRR8749032 | Uninduced | 0.197 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 30.025 |
| SRR8400027 | Control - Root | 31.319 |