Gene detail information of Glyur002307s00039397 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G24110.1 | 2.00E-51 | Calcium-binding EF-hand family protein |
| NR | AFK36647.1 | 6.16E-134 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9LRN6|CML22_ARATH | 5.00E-74 | Probable calcium-binding protein CML22 |
| trEMBL | tr|I3S8Q5|I3S8Q5_LOTJA | 2.00E-134 | Uncharacterized protein {ECO:0000313|EMBL:AFK36647.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02307 | 31802 | 33213 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002307s00039397.1 | PF13499.1 | EF-hand_7 | 59 | 116 | 1.20E-11 |
| Glyur002307s00039397.1 | PF13499.1 | EF-hand_7 | 151 | 208 | 1.30E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.879 |
| SRR1783600 | control | 1.877 |
| SRR1783602 | moderate drought stress | 1.809 |
| SRR1811619 | moderate drought stress | 2.163 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.732 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.158 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.361 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.292 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.581 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.862 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.679 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.927 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.645 |
| SRR2868004 | Drought Stress (root) | 13.337 |
| SRR2967015 | Control (root) | 12.413 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.543 |
| SRR9715740 | Leaf | 2.529 |
| SRR9715741 | Leaf | 1.902 |
| SRR9715739 | Root | 0.051 |
| SRR9715742 | Root | 3.317 |
| SRR9715743 | Root | 4.669 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.290 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.020 |
| SRR8749030 | Uninduced | 0.076 |
| SRR8749031 | Uninduced | 0.251 |
| SRR8749032 | Uninduced | 0.232 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.797 |
| SRR8400027 | Control - Root | 8.752 |