Gene detail

Gene detail information of Glyur002307s00039394.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G32800.1	0	protein kinase family protein
NR	KHN01845.1	0	Receptor like protein kinase S.2 [Glycine soja]
COG	YP_003372407.1	4.00E-19	serine/threonine protein kinase [Pirellula staleyi DSM 6068]
Swissprot	tr\|O48837\|LRKS2_ARATH	0	Receptor like protein kinase S.2
trEMBL	tr\|K7LAJ9\|K7LAJ9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G45400.2}

Sequence

Transcript Sequence

>Glyur002307s00039394.1
ATGCATCTCAATAGAATCTGCATTGTTTTNCCACCAAATTCTGGTGAATTGATGCAGCAACCTGAAATGGGTTCCCAACAACACCAACAACAACAAGCCTTTCAATCACCAAAGAAACAAGAAAGAGTCAAACAGCCTCACAGGGCTTGTTGTGGGGGAAAACAAGTTCTTGCTTTGATNCATGATTCTTTGACCAAGTTATGCAACTCAGGGTGGTGGAGATCAAATTGCCAACATGGGGTGGTACAGAAAGAAGAAAAGAAGAACAACAACAACTCCTCCAGTGTGTTCCACGACATGGATGGTGTGCAANTTGGTGTCAAGATTGGTANGGACAATCCAAGGATTTTCAGCTATGCAGAACTTTTCATAGGTTCCAATGGTTTCAGTGAGGATCAAGTTCTTGGGAGTGGAGGTTTTGGCAAAGTTTACAAGGCTGTTTTACCAAGTGATGGAACTTTAGTTGCTGTGAAATGCTACTTGGTGGCAGCAGAGAAAGGGAAGGAGCAATTTGAGAAGAGTTTTGCAGCTGAGTTAAAAGCCGTGGCGGATCTTCGCCACAAGAACCTTGTGAGGCTGAGGGGTTGGTGTGTNCATGAGGATCAGCTTCACCTAGTTTATGACTACATGCCTAACCGCAGCCTCGACCGCGTACTCTTCAACCGCAGGCCTGCAGAGAACTNGAAAGCTGGTCAGCCTCTTGGTTGGCGACAAAGAGGGAAGATTGTGAAGGGTTTGGCAGCTGCATTGCATTATCTACATGAGCAGCTAGAGACTCAAATCATTCACAGGGATGTGAAAACCAGCAATGTGATGCTTGATTCAAATTACAATGCTAGGTTGGGTGACTTTGGCATGGCAAGGTGGCTAGAACATGAGCTNGAGTACAACAGCAATGTGAAGAATACATCAAGCAGAAATAGAATTGGTGGTCATTTCAGGTTGGGAGAGACATCAAGGATTGGTGGCACAATTGGGTATCTCCCACCTGAAAGCTTGCAGAAACCAAGCAATGCTACCTCAAAATCTGATGTCTTTAGCTTTGGGATAGTTGTGCTGGAGGTGGTATCTGGAAGGAGAGCAATAGATCTCAAATACCCAGATGAGCAAATCATTTTGCTTGATTGGATCAGAAGGCTTTCTGATGAAGGAAAGCTTCTGGAAGCAGCTGATATTAGGCTACTACAACATGATGGATCCTCCTACAACCTTTCTGAGATGCAGCATCTCATTCATATAGGACTCCTTTGCACACTCCATGACCCACAATTGAGGCCAAGCATGAAATGGGTTGTNGAAGCACTTTCTGACAACAATTGTAATTTCAAAATGCCACCACTCCCTTCATTTCTCTCACACCCTCTTTATATCTCTTTGTCTTCCCCATCTGAGACTAGTCACAGTCCCAGCAGCACAAGTGGCAACACAAGCTCATCCACAGAGAATGCCAGCATGATCATCAACTATACTTCTTCATCAAACTATGTCACAGCNGCTGGGGAAGAAACTGTGTATGTAACTGCTGAAAACAAAAACAGTGAGACCATTTCTTCTAAGAGCAACATGCATCAGATTCACCACCAGCCACCATTTCCTGTGGTTGAAACACCAAGGGAAATATCATACAAGGAGATTGTTTCTGCTACAAGTAACTTTTCAGAATCAAGAAGGGTGGCAGAAATGGACTTTGGAAGTGCTTATCATGGCATCCTTGATGACAATTGCCATGTTTTGGTGAAACGCCTTGGGATGAAGACATGTCCTGCATTGCGNGATCGATTCTCCAATGAACTCAGGAATCTCGGGAGGCTTCGCCACAGGAATTTGGTGCAACTTCGTGGATGGTGCACTGAGCAAGGAGAGATGCTTGTTGTTTATGACTACTCAGCCAGTAGAATTCTAAGTCAACAACTTCTCCATCATAGAAAAGGTAGAACTGGATATTCTGTCCTTCAATGGCATCACAGGTACAACATAGTGAAAGCACTTGCCTCAGCAGTTCTCTATCTACATGAAGAATGGGATGAACAAGTGATCCACAGAAACATTACCTCTTCAGCTGTCATCATTGAACCAGATATGAACCCAAGACTCAGCTGTTTTGCTCTAGCTGAGTTTTTGTCAAGGAATGAGCATGGTCACCATGCAGCCACCGACACTAGCAAATCGGTTCGGGGGATTTTCGGTTACATGTCACCGGAATACGTGGAATCNGGTGAAGCAACCACGGCAGCTGATGTTTACAGTTTTGGTGTGGTGGTGCTTGAAGTAGTCAGTGGACAGATGGCAGTGAATTTCAGGCAGCAGGAGGTGCTTTTGGTGAAGAAGGTTCATGAATTTGAGATGAGAAAAAGACCATTGAAGGAATTAGCTGACACAAGACTCAANGGAGAGTACAATGACAAAGAACTGATGAGGTTGGTAAGGTTAGGAATTGCATGCACCCGTTGTAACCCACAATTAAGACCAAGCATGAGACAAATAGTGAGCATCCTTGATGGCAATGACAAGTTACTCAACCAGACAAACAAGGAGAGCAGGGAAGAATGGAGACAAAGATATGCTAGTTCTTTGTCAATGATTAAGAGAATTCAAGCTCTAGGAATACAGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02307	28668	31280	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.Other

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002307s00039394.1	PF00069.20	Pkinase	131	431	3.50E-45
Glyur002307s00039394.1	PF07714.12	Pkinase_Tyr	556	832	4.60E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.024
SRR1783600	control	14.052
SRR1783602	moderate drought stress	4.023
SRR1811619	moderate drought stress	3.936

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.187
DRR006520	Root Summer glycyrrhizin high producing strain	5.822
DRR006521	Root Winter glycyrrhizin high producing strain	0.171
DRR006522	Root Winter glycyrrhizin high producing strain	0.081
DRR006523	Root Summer glycyrrhizin low producing strain	9.822
DRR006524	Root Summer glycyrrhizin low producing strain	9.772
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.788
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.642

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.603
SRR2868004	Drought Stress (root)	9.560
SRR2967015	Control (root)	8.190

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.165
SRR9715740	Leaf	4.233
SRR9715741	Leaf	16.319
SRR9715739	Root	3.582
SRR9715742	Root	6.703
SRR9715743	Root	7.118

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.731
SRR8749028	MeJA induced 9h	9.707
SRR8749029	MeJA induced 9h	7.071
SRR8749030	Uninduced	21.623
SRR8749031	Uninduced	26.508
SRR8749032	Uninduced	12.493

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.187
SRR8400027	Control - Root	9.122