Gene detail information of Glyur002306s00034345 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G17680.1 | 1.00E-45 | disease resistance protein (TIR-NBS-LRR class), putative |
| NR | XP_003607620.1 | 0 | Tir-nbs-lrr resistance protein [Medicago truncatula] |
| COG | YP_003383028.1 | 9.00E-10 | XRE family transcriptional regulator [Kribbella flavida DSM 17836] |
| Swissprot | tr|Q40392|TMVRN_NICGU | 2.00E-42 | TMV resistance protein N |
| trEMBL | tr|G7JCP8|G7JCP8_MEDTR | 0 | Disease resistance protein (TIR-NBS-LRR class), putative {ECO:0000313|EMBL:AES89817.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02306 | 35567 | 38338 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002306s00034345.1 | PF00931.17 | NB-ARC | 3 | 211 | 1.10E-31 |
| Glyur002306s00034345.1 | PF00560.28 | LRR_1 | 321 | 340 | 0.34 |
| Glyur002306s00034345.1 | PF00560.28 | LRR_1 | 446 | 465 | 0.25 |
| Glyur002306s00034345.1 | PF12799.2 | LRR_4 | 469 | 509 | 3.60E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.427 |
| SRR1783600 | control | 5.539 |
| SRR1783602 | moderate drought stress | 2.732 |
| SRR1811619 | moderate drought stress | 2.668 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.402 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.315 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.228 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.117 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.587 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.824 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.866 |
| SRR2868004 | Drought Stress (root) | 3.321 |
| SRR2967015 | Control (root) | 3.369 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 21.542 |
| SRR9715740 | Leaf | 29.296 |
| SRR9715741 | Leaf | 25.610 |
| SRR9715739 | Root | 2.259 |
| SRR9715742 | Root | 17.007 |
| SRR9715743 | Root | 13.523 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.724 |
| SRR8749028 | MeJA induced 9h | 3.876 |
| SRR8749029 | MeJA induced 9h | 2.437 |
| SRR8749030 | Uninduced | 1.814 |
| SRR8749031 | Uninduced | 1.055 |
| SRR8749032 | Uninduced | 0.832 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.653 |
| SRR8400027 | Control - Root | 20.110 |